Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1682 |
Symbol | |
ID | 8019335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1788527 |
End bp | 1790020 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644830464 |
Product | type VI secretion protein, EvpB/VC_A0108 family |
Protein accession | YP_002981637 |
Protein GI | 241663277 |
COG category | [S] Function unknown |
COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.509952 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0159997 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTCCG CACAACAACA GAAACAACAG AGCGTCGCAA CGGCTGATCA GTCCGACTTT CCGGCGCTAC TGAACCGCGA GTTCTCCCCC AAGACCGACC AAGCCCGCGA GGCTGTTGAT CTGGCCGTCC GCACCCTGGC CGAGCAGGCG CTCGCCAGCA CCTTTACCAT GAGCGACGAT GCCTACAAGA GCATCGAAGC CATCATCGGC GCCATCGACT CCAAGCTCTC CGAGCAGATC AACCTAATCC TGCACAACGA AGACTTCCAG AAGCTCGAAT CCGCTTGGCG TGGTCTGCAT CACCTAGTCT CCAACACCGA GACGGATGAG AAGTTACGCA TCCGTGTAAT GGACGTCTCC AAGGATGAAC TGCGCCGCAC GCTGCGCCGC TACAAGGGCA TCGGCTGGGA CCAAAGCCCG TTCTTCAAGC GCATCTATGA AGAAGAGTAC GGCCAACTCG GCGGCGAACC GTATGGCTGC CTGGTTGCGG ACTATTACTT CGACCACACA CCGCCGGATG TGGAGCTGCT CGGTTCGTTG GCCAAGATCT CCGCCGCCGC ACACGCCCCG TTCATTGCTG GTGCATCGCC ATCGGTGCTG CAAATGGATT CGTGGCAAGA GCTGGCCAAC CCGCGTGATC TGTCCAAGAT CTTCCAGAAC CTGGAGTACG CCCCGTGGAA CAGCCTGCGC AACTCGGAAG ATGCCCGCTA CGTGGGTCTG GCCATGCCGC GTTTCCTCTC GCGCCTGCCG TACGGAATCA AGACCAACCC GGTCGATGCC TTCGACTTTG AAGAGGACAC CGACGGTGCC GACCACCGCA AGTACGTGTG GAGCAACGCG GCGTACGCCA TGGCCGTCAA CATCAACCGC TCGTTCAAGC AATACGGCTG GTGCACGCTG ATTCGCGGCG TGGAGAGTGG CGGCGTGGTT GAGAACCTGC CGTGCCACAC CTTCCCGACG GATGACGGTG GCGTTGACAT GAAGTGCCCG ACCGAGATCG CCATCTCAGA CCGTCGCGAA GCCGAGCTGT CGAAGAACGG GTTCATCTCG CTGGTGCATC GCAAGAACAC CGACTACGCC GCCTTTATCG GCGCGCAGTC GCTGCAAAAA CCGGCCGAGT ACTACGACGC AGATGCCACG GCTAACGCCA ACCTGTCGGC ACGTCTGCCG TACCTGTTCG CCTGCTCGCG CTTCGCGCAC TACCTGAAGT GCATCGTGCG CGACAAGATC GGCGCGTTCA AGGAGCGCGA GGATATGCAG CGCTGGTTGA ACGAATGGGT CATGAACTAC GTGGACGCCG ATCCGGCCAA CTCCTCGCAA GAGACCAAGG CACGCCGCCC GCTGGCTGCC GCGGAAGTGG TGGTCGAAGA GCAGGAAGGC AACCCGGGCT ACTACAGCGC CAAGTTTTTC CTGCGTCCGC ACTTCCAACT GGAAGGCCTG ACCGTCTCGC TGCGCTTGGT GGCGCGACTG CCGTCGGTTA AGGAAGCTGC GTAA
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Protein sequence | MASAQQQKQQ SVATADQSDF PALLNREFSP KTDQAREAVD LAVRTLAEQA LASTFTMSDD AYKSIEAIIG AIDSKLSEQI NLILHNEDFQ KLESAWRGLH HLVSNTETDE KLRIRVMDVS KDELRRTLRR YKGIGWDQSP FFKRIYEEEY GQLGGEPYGC LVADYYFDHT PPDVELLGSL AKISAAAHAP FIAGASPSVL QMDSWQELAN PRDLSKIFQN LEYAPWNSLR NSEDARYVGL AMPRFLSRLP YGIKTNPVDA FDFEEDTDGA DHRKYVWSNA AYAMAVNINR SFKQYGWCTL IRGVESGGVV ENLPCHTFPT DDGGVDMKCP TEIAISDRRE AELSKNGFIS LVHRKNTDYA AFIGAQSLQK PAEYYDADAT ANANLSARLP YLFACSRFAH YLKCIVRDKI GAFKEREDMQ RWLNEWVMNY VDADPANSSQ ETKARRPLAA AEVVVEEQEG NPGYYSAKFF LRPHFQLEGL TVSLRLVARL PSVKEAA
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