| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1565 |
|---|
| Symbol | |
|---|
| ID | 8019213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1660824 |
|---|
| End bp | 1661657 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644830343 |
|---|
| Product | squalene synthase HpnD |
|---|
| Protein accession | YP_002981521 |
|---|
| Protein GI | 241663161 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0179833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.166486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCCCG ACGATTACTG CGCCGACAAA GCGGCACCGC CCGGCAGCGA CGTGTACTAC
AGCGTATTGT TTCTGGCGCC CGAACGCCGC CGCGCGACCA TCGCGCTGGA AGCCGTACGC
CGCGAGCTGG AAGACGCCGT ACGCGACGCG AGCGATCCGG CGGTCGTTCA ATCGAAGCTG
CAGTGGTGGC GGCAGGAGCT TGCGCGGCTG TTCGAGGGCC GCCCTGAGCA CCCCGCGGCG
AAGGCATTGC AGCCGCATCT GGCCCGCTAC GATATCGGCG CCGTGCATCT GGGCGAATTA
TTGGCCGGCG TCGAGGCTGA CGCCATGCAA AACCGCTATC TGGATTGGCC CAACCTGCGC
CGCCACGGCG ATCAGGTGGC GGGCGTGGCA GGCCGGCTGA CGGCTCGCAT TGCCGGACAG
ACGCATGCGC GCACGCTGGA ATTCGCGCGG CTGATGGCAC TCGCCGAGCA GCTCGTTCAT
TTCGTCAGGA ACCTGGGCGA AGACGTGCGC CATAACCGCG TCTACATCCC CGTGGACGAG
CTGCAGCGGT TCAACGTACC CGCCGCCGAT CTGTTCAACC GCCGATATGC AGAAGGCTTC
AAGCCGTTGA TGACCTTTCA GGCCGAGCGC GCCCGGGCAA CATACAAAGA AGCGCTCGCC
GCGCTGCCGG CAGAAGATCG CCGCGCGCAG CGCTCGGCGC TGATTCGCGG CGTGCTCGCC
ATGCGCCTGC TCGACGAGGT GGAAGCCGAC GGCTTCCAGG TGCTCACGCA GCGCACGGAC
CTGACGCCGC TGCGCAAGCT CTGGCTGGCC TGGAAGACGC AGATCCGCGC TTGA
|
|---|
| Protein sequence | MTPDDYCADK AAPPGSDVYY SVLFLAPERR RATIALEAVR RELEDAVRDA SDPAVVQSKL
QWWRQELARL FEGRPEHPAA KALQPHLARY DIGAVHLGEL LAGVEADAMQ NRYLDWPNLR
RHGDQVAGVA GRLTARIAGQ THARTLEFAR LMALAEQLVH FVRNLGEDVR HNRVYIPVDE
LQRFNVPAAD LFNRRYAEGF KPLMTFQAER ARATYKEALA ALPAEDRRAQ RSALIRGVLA
MRLLDEVEAD GFQVLTQRTD LTPLRKLWLA WKTQIRA
|
|---|
| |