| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1538 |
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| Symbol | mnmC |
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| ID | 8019185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1631350 |
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| End bp | 1633368 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644830317 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_002981496 |
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| Protein GI | 241663136 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0998844 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACGCG GCCTCGTTCT CGCCACGCCT CAGCTCACGT CGGACGGCAC GCCGTTCTCC
GCGCAATACG ACGACGTCTA TCACAGCTCC GAAGGCGGTC TGGCGCAGGC GCATCACGTT
TTCCTGGGCG GCAATGGCTT GCCTAGCGCG TGGCAGGGCA AGCGAACCTT CACCATTGTC
GAAACAGGCT TCGGCCAAGG TCTGAATTTC CTTGCCACGT GGGCCGCGTG GCGCCACGAT
CCGCAGCGTT GTGCGCGACT CGATTTCGTT TCGATCGAGA AGCACCCATT CGATCGCGTA
GGCTTGTCGA TCGTGCATCC AAAGGACGGC GCGCTGGCGC CTCTTGCCGA GATGCTCCGT
CAATCGTGGC CCGTGCCCGT GCCGGGTGTG CATCGCCTGG CGTTCGATGG CGGCTGCGTC
ACCCTGACGC TGCTGTTTGG TGACGCGATG GAGACGCTGC CCCAACTGTC GTGCGCTGCC
GACGCGTTTT ATCTCGACGG CTTCTCTCCC GCAAAAAACC CGGATCTGTG GCAGCCGCGC
GTGTTCAAGC AGCTTGCGCG GGTAGCGCGC GCCGGCGCGA CATTGGCCAC GTATACCGCC
GCTGGATTCG TACGGCGCGG CTTGCAGGAA GCTGGTTTCG AGGTGCGCAA GGCGCCCGGT
TTCGGCACCA AACGCGACAT GACCGTCGCG CAATTTCCAA CCCACTGGCG CACGCGGCGC
GGACCGGCTG AAGCGCCGGT CTGGAGCCGA CATCACGCCA TCGTGCTCGG CGCCGGGCTT
GCCGGCTGCG CCGTTGCAGA ACGGCTCGCA TCGCGCGGCT GGCACATCAC GCTCATCGAT
GAAAACGAGG GCCCCGCGCG TGGCACGTCT GCGCATCGTG CAGCGGCCAT GCATCCCCAT
GTGTCCATCG ACGACAGCCT GCTGTCGCGG CTATCGCGCG CAGGCAATCT CCTTGCGCGC
CGCCACTGGG ACGCGCTGGA TCGCGCCGGC TTCGCCACAG GTTTCCAACG CACCGGTGTC
CTGCAACTCG CTGAACACGC CGGCGACGCC ATCGAGCAGC AACGCATCGT GCAAGCGCTC
GGCTATCCAA TCGATTACAT CGACTGGCTC AATGTGGAGC AGGCCGCCGA ACGCATCGGA
GCCAGCGTTC CGCAGGGAGG GTGGTGGTTT GCGCAAGCCG GCTGGGTCGC ACCGCCGGAC
ATTTGCCGTG CCAATCTCGC CGCTGCCGGG GCCGCTGTCG ACGCACGTTG GAACACGCGT
GTCGAATCGC TGCGCCAAGA CGGCGATCAA TGGGCGGCGC TGGACGCGCA CCAGAATGTG
ATCGCCAGGG CGCCGGTCAT CGTTCTCGCC AACAGTCTCG GTGCGGCACG TCTGGCGCCG
TTGACATCCG CGTCGCTCAA GCCGGTGCGC GGTCAACTCA CCGATGTGCC CGTCACTGCA
TTGCAAGCCG GCGCCGCGTG GCCAAAGGCC GTTGTTTGCG GCGAGGGGTA CCTCTTGCCT
GCCAAGCAGG GCGCACAGTC AGTGCGCATA GGTTCCTCAT TCCAACCGGG CGCATCCGAT
CTGACGGAGC GCGTCGCCGA TCACGTCGCC AATCTCCGGC GGCTGACCGC GTTGCAACCG
GGCCAAGCCG GGGCGCTGGC AAAGCTCGAC CCTGCCCAGC TACGAGGCTA TGTCGGTGTG
CGATGCGTCT CGGCCAATCG GTTGCCGTTG ATCGGTCCGC TGGCGGATGA GGCCGCCGCT
GCGGTACCCG GTTTTCGCTT GCGCGGGCCG CATGCGCAAT TGCCTCGCCT TGCCGGGCTG
TATGCCGCAC TTGCGTATGG TTCGCGCGGC CTCACATGGT CGGTACTGGG CGCGGAGTTG
CTGGCGGCAC AGATTGACGG TGGCCCGCTC CCCCTGGAAT CCGACCTGGT GGCAGCGCTC
GACCCTGGCC GCTTTGTCCT GCGTGCGTTG CAACACGGAG GCCTCCAAGG ACAGGGCGCC
GCTCGCACGG ACAGCATGGC CGAGGAACCG CCGGATTAA
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| Protein sequence | MPRGLVLATP QLTSDGTPFS AQYDDVYHSS EGGLAQAHHV FLGGNGLPSA WQGKRTFTIV
ETGFGQGLNF LATWAAWRHD PQRCARLDFV SIEKHPFDRV GLSIVHPKDG ALAPLAEMLR
QSWPVPVPGV HRLAFDGGCV TLTLLFGDAM ETLPQLSCAA DAFYLDGFSP AKNPDLWQPR
VFKQLARVAR AGATLATYTA AGFVRRGLQE AGFEVRKAPG FGTKRDMTVA QFPTHWRTRR
GPAEAPVWSR HHAIVLGAGL AGCAVAERLA SRGWHITLID ENEGPARGTS AHRAAAMHPH
VSIDDSLLSR LSRAGNLLAR RHWDALDRAG FATGFQRTGV LQLAEHAGDA IEQQRIVQAL
GYPIDYIDWL NVEQAAERIG ASVPQGGWWF AQAGWVAPPD ICRANLAAAG AAVDARWNTR
VESLRQDGDQ WAALDAHQNV IARAPVIVLA NSLGAARLAP LTSASLKPVR GQLTDVPVTA
LQAGAAWPKA VVCGEGYLLP AKQGAQSVRI GSSFQPGASD LTERVADHVA NLRRLTALQP
GQAGALAKLD PAQLRGYVGV RCVSANRLPL IGPLADEAAA AVPGFRLRGP HAQLPRLAGL
YAALAYGSRG LTWSVLGAEL LAAQIDGGPL PLESDLVAAL DPGRFVLRAL QHGGLQGQGA
ARTDSMAEEP PD
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