| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1505 |
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| Symbol | |
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| ID | 8019150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1589093 |
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| End bp | 1591573 |
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| Gene Length | 2481 bp |
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| Protein Length | 826 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644830283 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002981464 |
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| Protein GI | 241663104 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.483265 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGGCC TAGATCATTT GCCGCTTTCT GGCCGGACCA TTTCCGTTTC AGGCGCGGCA
TTGCCCATGC TTCTTGGGCA ACCCACCTTG GTGTTTTCAA GTCTATCCGG CACGGACAAC
CTCAACGAAC TGTTCGAATA CGATCTGGAA CTGCGCACGC CAGATGAACG TAACGCAATC
TATGGCCCCG CAGCCGACCT TGACAAAAAG ACCCTGGAGG GCACCGAAGT CACGATCCGG
ATTGAACTGG ATGGCTCGGG CATCGGGTTG CAAAGCGGCA CGGGTGCAGG CACACGCGAG
ATCACCGGGA TCGTCACACG GGTGCGCGGC CCCTATCTGG TAGGCCGACA TATCGCCTAT
CGCCTCACAC TGCGACCCTG GTTATGGCTT GCAACGCTGC GCTCAGACTA CAAGATCTAC
CAGGAAATGA ACGTTGTTCA GATTCTGGAT GCGTTGCTGG GAAATTACAT CTACCCGGTA
GAAAAACGCC TGGATGTGCG GAGGTACCCG AAAAGGGTCT TTCAGCAACA GTATGGCGAG
ACGGACTTCG CCTACTTCCA GCGCCTCACT CAAGAGTGGG GAATTTCCTG GTTCATGGCC
CATTCCGGCG GGCGGCAACG CCTTGTGCTA ACCGATAGCA ATAGCGCATT CGGGCCCTGC
TCAAGCGCCG CATATCACAC GATCCGCTGG CAGGCCACAC CCAACCGCAT CGACGAAGAA
CATGCCCATG AATTCGAACT CATTGACCAG CTTGTCTCGG GCGAGTGGCG TACATCGGAC
TACGACTTTG GCAAGCCTCG TGCCGACCTG AGCATTCGGG ACCGCGACCC GCGCGAGACT
GCGCACTCAA CGCACAGTCT CTACGAATAC CCCGGCGACC ACAGCCAGCC GGCAACCGGC
AGCGACCCAT GGGACGAAGG CCGATTCATC GCTCGCATTC GGATGGAGGA AATCCGGCAG
CATGGATTGC GCGGCAAAGG CAAGGGTAAC TTGCGCGCAA TGGTGCCGGG CTGCACCTTC
CACCTCGTTG GTTTTCTTGA ACAGGAAGCC AACCGTGAAT ACCTCATCTT CGGCACCAAG
CTTCGCATTG AAGACATCGG CGAAACCACG GGAACCGGCC AGCAATGGCG TTGCGAAGTG
GAATTCGAGG TACAGCCAAC CAACGAAATA TTCCGGCCCG CACGCACGCA GCACAAGCCA
CGTATGTCTG GCCCGATCCA AGCGCGTGTC GTCGGCCCGG CAGGACACCC GATACATACC
GATCAGTACG GGCGCATCAA GGTGCAGATG CCGTACGACC TGTACGGCAA CAACGACGAG
CACAGCTCAT GCTGGGTACG CGTTGCCAAT GCGTGGGCGG GCAATCGCTT TGGCGCCATG
CACCTGCCGC GGGTCGGGCA AGAGGTCTTG GTAATTGGCA TTCATGGCGA CCCGGACTGC
CTCGTCGCCA CCGAGCGCGT CTACAACAAG ATGAACCTGC CGCCGTGGGT CCTGCCTCAA
ATGCAAGCGC TCTCGGGTTT TGCGAGCCAG GAATTGCCCG ATGGAGAAGG CCACGGTGGT
GTCCGCCAAA ACAGGATTCT GGCGGATGAC ACACCGGGGC AACCCCAGGC TCAAATCGGC
TCGGACTTTC AATCATCGGA ATTGGCCCTC GGTCATATCG TTGCGATTCC TGACTGGCAG
GGGCGCAGGC ATAAGCGCGG TGAGGGCTAC GAGCTGCGCA CCGATGCGTG GGGAGCCATG
CGGGCATCCA TGGGCATGCT TCTAACCACC TACAAGCGCA ATCACGGCGA CGACTACGCG
CTAAGCATGG GCGATATGGT GGACGCCTTG CAACAAGCGG AGTGTCAGAC CGAACAACTG
GCCGACGCCG CTCAGCAGGC CGATGCCCAA AATGGCGAGC AAAAGGAAAT CGCCAAGGCC
ATGGCTCGCC AGCACGCCGC GCTCAAGGGA GATGGACCGC TCAAGGAATT CACGGCCCCT
CAGCTGGCGC TGACGAGCCC CGTGGGCATC GCCACCTCAA CACCGGGCCT GACCCACCTG
CAGAGTGGCA CGCATCTCGC AATTACCACC GGAGACCATG TATCCGTCAC AGCTGGCGGA
GGATTCTTCG CCAGCGTGCG GCAGGCATGG CGTGTCTTTG TCTACGAGGC AGGAATGCGC
TTTGTTGCTG CCGCCGGCAA CATCAATGTG CAAGCCCTCA AGAATTCCAT TCACCTGCTC
GCCAAGCTCG AAATTACCGC CACCGCCGAG AAGATCACCA TCAAGGCCAA GCAGGAGCTG
CAACTCAACG GCGGAGGCAG CTATATCAAG TTGACCACCG GCGGTATCGA AAACGGCACC
GAAGGTGCGT GGAAAGTCTA CGCCGCCAGT AAGAACCTCA CCGGCCCAAG CAGCATGCCC
GTCGACCTCA AGCCCAAGCA GGTGTGCCTT GAATGCCTGC TAAAGGCCGC CATGCGCAAT
ACCGCCGTGG TGCCCCGCTA A
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| Protein sequence | MDGLDHLPLS GRTISVSGAA LPMLLGQPTL VFSSLSGTDN LNELFEYDLE LRTPDERNAI
YGPAADLDKK TLEGTEVTIR IELDGSGIGL QSGTGAGTRE ITGIVTRVRG PYLVGRHIAY
RLTLRPWLWL ATLRSDYKIY QEMNVVQILD ALLGNYIYPV EKRLDVRRYP KRVFQQQYGE
TDFAYFQRLT QEWGISWFMA HSGGRQRLVL TDSNSAFGPC SSAAYHTIRW QATPNRIDEE
HAHEFELIDQ LVSGEWRTSD YDFGKPRADL SIRDRDPRET AHSTHSLYEY PGDHSQPATG
SDPWDEGRFI ARIRMEEIRQ HGLRGKGKGN LRAMVPGCTF HLVGFLEQEA NREYLIFGTK
LRIEDIGETT GTGQQWRCEV EFEVQPTNEI FRPARTQHKP RMSGPIQARV VGPAGHPIHT
DQYGRIKVQM PYDLYGNNDE HSSCWVRVAN AWAGNRFGAM HLPRVGQEVL VIGIHGDPDC
LVATERVYNK MNLPPWVLPQ MQALSGFASQ ELPDGEGHGG VRQNRILADD TPGQPQAQIG
SDFQSSELAL GHIVAIPDWQ GRRHKRGEGY ELRTDAWGAM RASMGMLLTT YKRNHGDDYA
LSMGDMVDAL QQAECQTEQL ADAAQQADAQ NGEQKEIAKA MARQHAALKG DGPLKEFTAP
QLALTSPVGI ATSTPGLTHL QSGTHLAITT GDHVSVTAGG GFFASVRQAW RVFVYEAGMR
FVAAAGNINV QALKNSIHLL AKLEITATAE KITIKAKQEL QLNGGGSYIK LTTGGIENGT
EGAWKVYAAS KNLTGPSSMP VDLKPKQVCL ECLLKAAMRN TAVVPR
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