| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1487 |
|---|
| Symbol | |
|---|
| ID | 8019132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1568171 |
|---|
| End bp | 1568812 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830265 |
|---|
| Product | Nicotinamidase |
|---|
| Protein accession | YP_002981446 |
|---|
| Protein GI | 241663086 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0102489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0234233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGA CGTCCACCGA TTGCCTGCTG ATCATCGACG TGCAGAACGA TTTTCTGCCC
GGCGGTGCGT TGGCCGTGCC GGACGGCGAC CAGGTCATCG CGGTCGTCAA CCTGCTCGCC
AAGGCATTCG GGCCCGTTGG TCGTACTGTG CTGACGCAGG ACTGGCACCC GAGCGAGCAC
GTGTCGTTCG CGGCCAACCA TCCTGGTACG CAGCCATTCG GCATGATCGA CCTGCCGTAT
GGGGAGCAAG TGCTGTGGCC AGTTCACTGC GTACAGCGCA GCACGGGCGC CGCGCTGGCA
GATGGGTTGG ACGTGCCGCA CGCGCAGTTG ATCATCCGCA AGGGCTATCA CCCGCACATC
GACAGCTATT CCGCATTCTT TGAAGCGGAT CGGAAGACGC CGACCGGCCT GCTGGGCTAC
CTGCGCGAGC TTGGGGTCGA GCGCGTGTTC TGCGTTGGCC TCGCCACGGA TTTTTGCGTG
GCATGGTCTG CGCTGGATGC GCGTGCTGCG GGGCTGGAGG TCGCTGTCAT CGAGGATGCC
TGTCGCGCGA TCGACCTCAA CGGTTCGCTC GCGCAGGCGT GGCAGCGGAT GACGGATGCA
GGCATCGCAC GGTTGCAGTC GGCGGACGTT TTGAACGGAT AA
|
|---|
| Protein sequence | MQLTSTDCLL IIDVQNDFLP GGALAVPDGD QVIAVVNLLA KAFGPVGRTV LTQDWHPSEH
VSFAANHPGT QPFGMIDLPY GEQVLWPVHC VQRSTGAALA DGLDVPHAQL IIRKGYHPHI
DSYSAFFEAD RKTPTGLLGY LRELGVERVF CVGLATDFCV AWSALDARAA GLEVAVIEDA
CRAIDLNGSL AQAWQRMTDA GIARLQSADV LNG
|
|---|
| |