| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1349 |
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| Symbol | |
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| ID | 8018994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1429651 |
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| End bp | 1431039 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644830129 |
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| Product | membrane-associated zinc metalloprotease |
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| Protein accession | YP_002981310 |
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| Protein GI | 241662950 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00245183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.774325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGACCG TTTTAGCGTT TGTCTTTGCG ATCGCGGTAC TGATCGTCAT TCACGAACTG
GGCCACTACA GCGTCGCGCG ATTGTGCGGC GTGAAAGTGC TCCGGTTTTC CGTCGGCTTT
GGCAAAGTGC TGTTCCGCCG CGTCGGTCGT GGCCCTGACC ACACCGAATG GACGATCTGC
GCCATTCCAC TGGGCGGCTA CGTCAAGATG CTCGGCGAGG GATCGCGAGA CCCCGAGAAA
GACCCGCCCA TCCTCCCCGA AGACCTCCCA CGCACCTTCG ATCACCAGCC GGTCTACAAG
CGATTCGCCA TCGTGGCGGC TGGCCCGGTC GCCAATTTCC TTCTGGCGAT TGCGCTTTAC
GCGGTGCTGG CATGGGTGGG CGCAATCGAG CCGTTGCCTA TCCTCGGCGC TCCGCCGCCG
GGCAGCATCG CCGCCCAGGC CGACTTGCGC GCCCGGGACC GGGTGATCGC GATCGGCACG
GACGGCGAGA CGCCGGCCTC TGTGCGCAGT TGGAGCGACG TCCGCATGCG CTTGTACTCG
GCCGGCATCG CGGGGCGCGA CGCGATTGTG CAGGTGCGCG GCGCCGATGG TGCCGAACGC
ACCGTCCGCC TGCATGGCTT GCCGAGCGCA GCCCGTACGC CGCAGGCTGA TGTGATTGAC
CAGATTGGTT TGCGTCTGCT CGGCGGCCCG GTCACCATCG TCGATGTGTT GCCCTCCAGT
GCGGCGGCGC GCGCAGGGTT GCGGGCCGGA GACCAGATCG TTCGCTTCGC GGGCCAGCCC
GCCGATCAGG CAATGGACCT CATCCGCCAG ATCCGCGCCA TGCCGGAGCA GAACGCGTCG
ATCGATATTC TGCGCAACGA TCAGCCCATG ACGTTGCCTG TTCGCCCTGA TGCTGACACC
GACCCCAAAA ACCCGACCGG CCCGAAGATC GGCAAGCTTG GTGCGCAGCT CAACCAGAAG
GTGGAAACGG CGATGATCCG GGACGAGCCG GTCGCCGCAC TGGGCCATGC CGTAGGCGAG
GTCTGGCGGA CTTCGGTGCT GTCGCTGCAG GTGCTGGGCA AGATGATCGT CGGTCAGGCG
TCGCTGCAGA ATCTGAGCGG GCCGATCACG GTGGCGGACT TTGCGGGCAA GGCGGCAAGC
CTTGGCTGGC AGACGTTTGT GAGCTTTCTC GCGTTGATCA GCGTCAGTCT CGGCGTGCTG
AACTTATTGC CCGTTCCGGT ATTGGATGGG GGGCATTTGC TGTATTATTG CGTGGAATTT
TTGACTGGTC GACCCGTGCC GGAATCCTGG CAAGCAGTCC TTCAGAAGAT CGGCGTCGCC
TGCATCCTGC TTCTCACTTC GCTCGCCCTG TACAACGATT TGAGTCGGTT GTTTTTGACT
CGAGGCTAG
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| Protein sequence | MQTVLAFVFA IAVLIVIHEL GHYSVARLCG VKVLRFSVGF GKVLFRRVGR GPDHTEWTIC
AIPLGGYVKM LGEGSRDPEK DPPILPEDLP RTFDHQPVYK RFAIVAAGPV ANFLLAIALY
AVLAWVGAIE PLPILGAPPP GSIAAQADLR ARDRVIAIGT DGETPASVRS WSDVRMRLYS
AGIAGRDAIV QVRGADGAER TVRLHGLPSA ARTPQADVID QIGLRLLGGP VTIVDVLPSS
AAARAGLRAG DQIVRFAGQP ADQAMDLIRQ IRAMPEQNAS IDILRNDQPM TLPVRPDADT
DPKNPTGPKI GKLGAQLNQK VETAMIRDEP VAALGHAVGE VWRTSVLSLQ VLGKMIVGQA
SLQNLSGPIT VADFAGKAAS LGWQTFVSFL ALISVSLGVL NLLPVPVLDG GHLLYYCVEF
LTGRPVPESW QAVLQKIGVA CILLLTSLAL YNDLSRLFLT RG
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