| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1348 |
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| Symbol | |
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| ID | 8018993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1428374 |
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| End bp | 1429564 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644830128 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_002981309 |
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| Protein GI | 241662949 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00572511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.766336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGTT TGACCGTTCT TGGCGCCACC GGCTCCATTG GCGACAGCAC GCTCGATGTG
GTGCGCCGCC ATCCCGACAA GTACAGCGTT TTTGCGCTGA CTGCCAACGC GCAGGCCGAC
AAGCTTGCGG TCCTCTGCCG CGAGTTTCGC CCCAAGATGG CGGTGCTGGG TTCGCCTGCT
GCGGCGGATG CGTTGCGTGA TCAGCTCGGC GCCGAGGCAG CCGGTATCGA AATCCGCTCC
GGCACCGAAG CATTGGAAGA GGCCGCCGCC CACCCTGGCT GCGATGCCGT CATGGCCGCT
ATCGTGGGCG CGGCCGGCTT GCGCCCGACG CTTGCGGCCG TGCGCGCCGG CAAGCGCGTG
CTGCTGGCCA ACAAGGAGGC GCTGGTCATG TCCGGCGCGC TCTTCATGGA CGCCGTGCGT
CAGCATGGCG CCACCGTGCT TCCAATCGAC AGCGAGCACA ACGCCATCTT CCAATGCCTG
CCGCAGCAAG TTCCGCAGTT CGGGCGCGGC GTGTCACGCA TCGTGCTGAC GGCATCGGGC
GGCCCGTTCC GCACGCGCCC TGTAGAGTCT CTTGCGGATG TCACGCCAGA TCAGGCGTGC
GCGCATCCGA ACTGGGTGAT GGGGCGCAAG ATCTCGGTCG ATTCCGCCAC CATGATGAAC
AAGGGGCTGG AGGTGATCGA GGCACACTGG CTGTTCGGCG TCCCGGTCGA GCATCTCGAA
GTCCTGATCC ACCCGCAGAG CGTCATCCAT TCGATGGTCG GCTATGACGA TGGCTCCGTG
CTGGCGCAGC TCGGCAACCC GGATATGCGC ACGCCGATCG CCTACGGCCT GGCATATCCC
GAGCGTATCG AGGCCGGCGT TGCGCTGCTC GATCTCGTCA CCACGGGCGC ACTGACTTTC
GAGGCGCCGG ACCTGCGCCG ATTCCCGTGC CTGGCGTTGG CGTTCGAGGC ACTGCGTGCC
GGTGGTACGG CACCTGCTGC ACTGAACGCG GCCAACGAGG TGGCTGTCGA GGCATTTTTG
CAGCGCCGCA TCCGATTCAC CGAGATTGCT GCCGTCGTGG CTGACACACT CGCCCGCACG
TCGGTCATGC CAGCTGATTC GCTTGACACC GTTTTTGCTG CCGACGCCCA GGCGCGTCAG
CAGGCCGAGC GCTATATCTC GACCGTATGC GCGCAGCTGC CGGCTGCATG A
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| Protein sequence | MMRLTVLGAT GSIGDSTLDV VRRHPDKYSV FALTANAQAD KLAVLCREFR PKMAVLGSPA
AADALRDQLG AEAAGIEIRS GTEALEEAAA HPGCDAVMAA IVGAAGLRPT LAAVRAGKRV
LLANKEALVM SGALFMDAVR QHGATVLPID SEHNAIFQCL PQQVPQFGRG VSRIVLTASG
GPFRTRPVES LADVTPDQAC AHPNWVMGRK ISVDSATMMN KGLEVIEAHW LFGVPVEHLE
VLIHPQSVIH SMVGYDDGSV LAQLGNPDMR TPIAYGLAYP ERIEAGVALL DLVTTGALTF
EAPDLRRFPC LALAFEALRA GGTAPAALNA ANEVAVEAFL QRRIRFTEIA AVVADTLART
SVMPADSLDT VFAADAQARQ QAERYISTVC AQLPAA
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