| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1315 |
|---|
| Symbol | |
|---|
| ID | 8018960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1388028 |
|---|
| End bp | 1390106 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644830095 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002981276 |
|---|
| Protein GI | 241662916 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.199616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGC ACAGATTCCG GGCGAGCGCT GCCTCGGCAC GGTGCAATGC ACCAGTCCAA
ACGCACCTGG GGCGCCGGGA TCGTGCGACG CAGCACGCTA CAATCGCACC CTTCTCCGAT
TTGCCTTCAG CGCAGTTTTT CGTGATCCGA TTCGACGACC TCGTCCTCCA GCGCGGCACC
AAGGTGCTGT TCGACCACGC CACCGCCACA CTCAACCCCG GTGAACGGGT CGGCCTTGTC
GGCGTGAACG GCAGCGGCAA GTCCACGCTG TTTTCAATGC TGCGCGGCGA ATTGCACGCC
GACGGCGGCG AAGTCGCCAT CCCGCCCACC TGGCAGGTCG CGCACGTGGC GCAGGAAACG
CCCGCAGTCG ACCGCAGCGC GCTCGACTAC ACGCTCGATG GCGACACCCG CCTGCGCGAA
ATTGAACGCC GGCTCGCCGC AGCAGAAGCC GCGCACGACG GCCATGCGCA GGCCGAAGCC
CACACGGCCT TTGCCGATGC CGACGGCTAC ACCGCACCGG CGCGTGCGCA GGCGCTGCTG
CTCGGCCTCG GTTTCACGAT GGCGCAGACC ACGCAACCCG TGGCGAGCTT CTCCGGCGGC
TGGCGCATGC GTCTGAATCT GGCCCAGGCG CTGATGTGCC CGTCCGACCT GCTGCTGCTC
GACGAGCCCA CCAACCACCT GGATTTGGAC GCCGTGGTCT GGCTGGAAGA CTGGCTGTCG
CGCTACGCCG GCACGCTGGT GATGATTTCG CACGACCGAG AATTTCTCGA CGGCGTCTGC
AACGTCACGC TGCATATCGA GAACCAGAAG CTCAAACGTT ACGGCGGCAA CTACACGCAG
TTTGAGACGC AACGCCTGCA GCAGATGGCG CTGCAGGAAG CGTCGTACGC GCGCCAGCAA
AAGCAGATCG CGCACCTGGA ATCGTTCATC ACGCGCTTCA AGGCGAAGGC CAGCAAGGCC
AAGCAGGCGC AGAGCCGCGT CAAGGCGCTG GAGCGCATGG AGCGCCTTGC GCCCGTGCAT
GCGGCGGCGG GTTTCTCGTT CGAATTCCGC GAGCCCGAGG CGGCACCCAA CCCGATGCTC
ACGTTTGAAG GCGTCGATTG CGGCTATCCC GGCCCGAGCG TTGATGAGCC CATCACCATC
CTCAAGCACC TGACGTTCTC CATCCAGACC GGCCAGCGCA TCGGCCTGCT GGGGGCCAAC
GGCCAGGGCA AATCAACGCT GGTAAAAACA CTGGCCGAGA CGCTGGCACC GCTGTCCGGC
ACGATCCGGC GCGGCAAGGG CCTGCAGATC GGCTACTTCG CCCAGCACCA GTTGGAAACG
CTGGACGATC ACGCCTCCCC GCTGTTGCAT CTGGCGCGGC TGGCACCCGA CGTGCGCGAG
CAGGAACTGC GCGACTTTCT CGGCAGCTTC AACTTCCGCG GCGACATGGC GACCTCGCCC
ATCGAGCCGT TCTCCGGCGG CGAGAAGGCA CGCCTGGCGC TCGCCCTGAT CGTCTGGCAG
CGCCCCAACC TGCTGCTGCT CGACGAGCCG ACCAACCATC TGGATCTCGA CACCCGCGAA
GCCCTGACAA TGGCGCTGGC CCAGTTCGAC GGCACGCTGA TCCTCGTCTC GCACGATCGG
CATCTGCTGC GCGCCACGAC CGACCAGTTC CTGCTTGTCG GCCAGGGCAC CGTCGCCCCG
TTTGATGGCG ATCTGGACGA CTACCGCGAC TGGCTGCTCA AACAAGCCGC GGCCAAGCGC
GCAGCCGCCA GCGCCCAGGC TGCTCCGGCC GATGCGGATG GCGCGCCGAC CACCAACCGC
CGCGACCAGA AGCGCGAGGA AGCCGCCGAA CGTCAACGCC TGAATGCGCT GCGCAAGCCG
CTGCAGAAGA ACGTCGACGC GATTGAAAAA CGCATGGCGC CGCTGCAAAA AGAAAAGGCA
GAACTCGAAG CCTTCCTCGC CGACGGCGCC GCGTATGAAG ACGCGAACAA GACGCGCATG
ATGGAAAGCC TGCGCCGCCA GGCCGAGCTG AACGCCGAAC TCGACGAGCT GGAAGAACGC
TGGCTCGAGC TGCACGAACA ACTCGAACAA ATCAATTGA
|
|---|
| Protein sequence | MPPHRFRASA ASARCNAPVQ THLGRRDRAT QHATIAPFSD LPSAQFFVIR FDDLVLQRGT
KVLFDHATAT LNPGERVGLV GVNGSGKSTL FSMLRGELHA DGGEVAIPPT WQVAHVAQET
PAVDRSALDY TLDGDTRLRE IERRLAAAEA AHDGHAQAEA HTAFADADGY TAPARAQALL
LGLGFTMAQT TQPVASFSGG WRMRLNLAQA LMCPSDLLLL DEPTNHLDLD AVVWLEDWLS
RYAGTLVMIS HDREFLDGVC NVTLHIENQK LKRYGGNYTQ FETQRLQQMA LQEASYARQQ
KQIAHLESFI TRFKAKASKA KQAQSRVKAL ERMERLAPVH AAAGFSFEFR EPEAAPNPML
TFEGVDCGYP GPSVDEPITI LKHLTFSIQT GQRIGLLGAN GQGKSTLVKT LAETLAPLSG
TIRRGKGLQI GYFAQHQLET LDDHASPLLH LARLAPDVRE QELRDFLGSF NFRGDMATSP
IEPFSGGEKA RLALALIVWQ RPNLLLLDEP TNHLDLDTRE ALTMALAQFD GTLILVSHDR
HLLRATTDQF LLVGQGTVAP FDGDLDDYRD WLLKQAAAKR AAASAQAAPA DADGAPTTNR
RDQKREEAAE RQRLNALRKP LQKNVDAIEK RMAPLQKEKA ELEAFLADGA AYEDANKTRM
MESLRRQAEL NAELDELEER WLELHEQLEQ IN
|
|---|
| |