Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1151 |
Symbol | ispG |
ID | 8018794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1216268 |
End bp | 1217554 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644829932 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_002981115 |
Protein GI | 241662755 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.896437 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.550837 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATCT CCACACCTCT CGATTGCGCT CCAGCCTTGG TGGGCCCGCT GCCGCGCCGG AACTCGCGCG CCGCGCAAAT CCGCTGGGGT GATCGTGTTG TGCACGTCGG TGGCGACGCG CCGGTCTGCG TGCAATCGAT GACGAATACC GACACGTCGG ACGCCATCGG TACCGCAATC CAGGTAAAGG AACTGGCGCG AGCGGGCTCT GAGTTGGTGC GCATCACAGT GGATACCCCG GCTGCTGCGG CCGCGGTGCC GGCCATCCGA GAGCAGCTCG ACCGCATGGG TGTGGATGTG CCGCTGGTCG GCGATTTCCA TTACAACGGC CACAAGCTGC TGCAGGACTA TCCGGAGTGC GCGCAGGCGC TATCCAAGTA CCGGATCAAC CCGGGCAACG TCGGGCAAGG TGCCAAGCGC GACACGCAGT TTGCGCAGAT GATCGAGATC GCCTGCCGCT ACGACAAGCC GGTGCGTATC GGGGTGAACT GGGGCAGCCT TGACCAAGAT CTGCTTGCGC GCATCATGGA CGAGAACGCG CAACGTGCAA CCCCCTGGGA TGCCCGCGCC GTGATGGTCG AGGCGCTGAT CACCTCCGCG ATCCAGTCCG CGCAGAAGGC TGAAGAACTG GGCTTGCCAG GCAGCCAGAT CATCCTGTCG TGCAAGGTGT CGGCGGTGCA GGATCTGATT GCTGTGTACC GCGAGCTGGC GCGTCGCTGC AATTACGCGC TGCACCTGGG CCTGACCGAG GCCGGCATGG GGAGCAAGGG TATCGTCGCT TCCACGGCGG CGTTGTCAGT GCTGCTGCAG GAAGGCATCG GCGACACGAT CCGCATTTCG CTCACGCCGG AACCGGGTGC GCCGCGCGAG AAGGAAGTCA TCGTCGCGCA AGAGATTCTG CAGACCATGG GCCTGCGCAA TTTCACGCCC ATGGTGATCG CGTGCCCGGG TTGTGGGCGC ACGACCAGCA CGGTGTTCCA GGAACTCGCG GCGCGCATCC AGTCGTATTT GCGCGAGCAG ATGCCGGTGT GGAAGGAGCA GTACCCCGGC GTCGAAGAGA TGAATGTGGC CGTGATGGGC TGCATCGTCA ACGGCCCCGG AGAGAGCAAG CACGCCAATA TCGGCATTTC GCTGCCAGGC ACGGGCGAGT CGCCGGCGGC GCCGGTTTTC GTTGATGGCG TGAAGGTGAA AACGTTGCGC GGCGAGCGCA TCACAGAAGA ATTCCAGGCG ATCGTCGACG AGTACGTGCG GACGCATTAC GGCGCACAGA CTCCGGCGGC GGTCTAA
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Protein sequence | MEISTPLDCA PALVGPLPRR NSRAAQIRWG DRVVHVGGDA PVCVQSMTNT DTSDAIGTAI QVKELARAGS ELVRITVDTP AAAAAVPAIR EQLDRMGVDV PLVGDFHYNG HKLLQDYPEC AQALSKYRIN PGNVGQGAKR DTQFAQMIEI ACRYDKPVRI GVNWGSLDQD LLARIMDENA QRATPWDARA VMVEALITSA IQSAQKAEEL GLPGSQIILS CKVSAVQDLI AVYRELARRC NYALHLGLTE AGMGSKGIVA STAALSVLLQ EGIGDTIRIS LTPEPGAPRE KEVIVAQEIL QTMGLRNFTP MVIACPGCGR TTSTVFQELA ARIQSYLREQ MPVWKEQYPG VEEMNVAVMG CIVNGPGESK HANIGISLPG TGESPAAPVF VDGVKVKTLR GERITEEFQA IVDEYVRTHY GAQTPAAV
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