Gene Rpic12D_1125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1125 
Symbol 
ID8018767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1185514 
End bp1188357 
Gene Length2844 bp 
Protein Length947 aa 
Translation table11 
GC content66% 
IMG OID644829906 
Producthypothetical protein 
Protein accessionYP_002981089 
Protein GI241662729 
COG category[L] Replication, recombination and repair 
COG ID[COG3893] Inactivated superfamily I helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.290097 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGACGC TTGCCTTCGC GCCTGGCCCA GCATTCCTTT CGCGTGCCGC CGACGCTGCA 
TGGCGCTTTC TGGATGCGCA TGCGCAACCC CCCGGTACCG CGACGATCGT CGTGCCGACA
GCCGCGCAGA TTCCTGGGGT GCGCGGCGCT CTGCATGCCG GTGCGCAAGC AGCCGGCACG
CCGCGTTTGC TGCCGCGCAT TCTGACCCTG GGGCATTGGC TGCTCGATTT GCCACCGGAA
GCAGGTTCGC CCGCCGGGCG CACGCCGCTG TCGCGATTAC TGGCAGTGCA GCAGGCGCTC
AAGACGCTGG CTTGGCTGCG TGAAGCGCTG GGCGCGCAGG ACGATGCCGC CCTGTGGGGC
GTAGCGCAGG TGCTCGTGAC GGTGTCGGAC GACTTGTCGC AACGTTGGCT GACGCTCGAT
GCCGCACACA GTGGCGCAGA TGGGCGGGCT GATGAGCTGG AGTCGGCGTT GGCGGAAGCG
TTGGAACGCA CTTACGCACA ATTGTCCGAA CGCTTTCTCG GCACCGAATC GCGCATTGTG
CTGACGTTCT GGCGGTTGCT TTCAGGCGCA GCGGACCCGA TTCCAATGCG GCTGCGTGCC
ATGCAGCGTC TGCTTGACGA ATTGCGCGGC CCCATCGTGT GGATGAGCCC GACGGACCCC
GAGGCGGTCG ATTTGGATTT CCTGCAGCGC GCCGCCGAGC GGGTGCCCGT GTTGAGCATC
GGCTACGACT GGAATGCGCC TGAAAGCGGC GCGTCTGCGG CGCCTTCCAC ACACGCGGAT
TTCCGCAATC TGCTGCTGCA CGCCTGGCCC GAATGCGCCA CGCCCGCCCA GGCGGCGGAT
GATGCTGCCG CCGCGCAATT GCCCGCGCCA ATCCTTCGCA TTGCAGGCGC TGCACGTTTT
GAAGACGAGG CAGCCTTCGC CGCGCATACG CTGGTCGATT GGCTGAATGC CGGGCGCCGC
TCGTTGGCGC TGGTGGCACA GGATCGCATC GTCGCGCGGC GCGTTCGCGC GTTGCTGGCG
CGCGTGAACG TGCCGGTGCG CGATGAGACC GGCTGGAAGC TTTCCACGAC GCGCGCCGCT
GCGGCACTTA TGCGCTGGGT CGACGTGGTG CAGGGCGACG GCGATACCGC GGCGCTGCTC
GATCTCATCA AGAGCCCGTT CTGTTTGCGC GATGCCGATG CCGGCACGGC CACGCCTGCC
TGGGTAGCAG AACTGGAGCG CCGGGTGCGC CGGCATAACG TTTCAGGTGG ATGGGGGCGA
TTGCGCCGGC TGGTTACCGA TCGCCCTGCG AGTGATGCCG AGGGCGAAGC AAAGGTCAGC
CGCCTTGCCG ATCGTCTGGG CGTGCTGGCC GACGAAGCGG CGCTGTGGCG CCGGGCCGGC
AGCGCCAAGC TCGACGCGTG GGTAGCGCTG TTGGCAGGCA CGCTCGATCG TCTGCATATG
CGCACTGGGT TGCAGAACGA CGATGCGGGC CGGCAACTGC TGGACTGGAT TGACCGGCTG
CGTACGTCCA TACATGGCAG CACCGATGCG GGCGCGCGTT ACTCCCTGAC GGAATGGCGC
GCGTTGCTCT CGATGCTGCT CGAATCTGCG GTCTTCAGTG AGCCTTCACC GCCAGCGGAC
CGGCGTGTTG TCATCCTGCC GCTGAATGGC GCGCGCATGC GGCGTTTTGA TGGCGTGGTG
GTGGTGGGTT GTGACGATGC GCAGTTGCCG TCTGCGCAGC CCGAATGGCT GTTTTTTTCT
AACGACGTGC GGCGCGAACT CGGTTTGCCC GACCGCGCAC AGCGCTTTGC GCAGCAGGCT
CGTGACTTGG CCGAGGTGCT CCTCAACCAG CCCGAGGTGG TGTTGACCTG GCAACGCCAC
GGCGGACGTG GCGAGCCGCA TCGCCTTTCC GGCTGGCTTG AACGCTTGCA ACGGCGCTTG
GCGGTGAGCG GCGTGCGTAT CGATACGTCA GTCACGTTGC CCAGTTTGCA GACCACGAGC
CAGCCCACCG ACATGCCCGC GCCCGCAGCG CCGACGCTGG TGCCGTCCAC GCTGAGCGCG
GCCGCATACA ACAGTCTGCG GCGCTGTCCA TACCAGTTCT TCGTCGGTCG CATGCTGCGG
CTGGGCGAGC TGGAAGAAGT TTCCGATGAA CTGGAGAAAC GCGACATCGG CGGGATCCTG
CACGCGATCC TGCATCGTTT TCACCGGCAG TTGCTGGAAA CGCCGATGCA CGATCCGGCC
GATCGTCTGA GTCTGCTGCA GACCATTACC GACGAACAGT TTGGCCCGCT GTTGGCCGAG
GACGGCAACG CGTTGCGCTT CTATCGGCGC TGGCTCGGTG TGATGCCGTC GTACCTGGCG
TGGCAGGCCG CTCGCGAGGC GGATGGCTGG CGCTTTGAGG CAGGTGAAGT CGATGTCGAT
ACGTCCATCA CATTGTCCGA CGAGCGCGCG CTGCGCTTAC GCGGCCGGAT CGACCGCATT
GATGTGCACG ACGAACACGG CGTGGCGGTG CTCGATTACA AGACGCAGTC GCAAATGGCG
CTGGTGCGTC GCGCCAAGAC GCCGTTTGAG GATTGCCAGC TTCCGTTTTA CGGCGTCCTC
GATGCGCGTG CAGATTCGGG CGGGTGGGTT TCGCTCGACG GCGAGGCCCG CGGCGACAAG
CGCGACGTTG CATTGCCCGA TTTCACGCAA GTCGTCGATT GGTTGATCGA GCAGATGCAA
AAGGACATGA CGGCCCTCGC TGCCGGTGCG CCCCTGCCGG CGTTCGGTGA TGAATCGGCG
TGCCGCTACT GCGCGGCGCG TGGCCTATGC CGCAAGGGGT ATTGGACCGA AGGCGCACCG
CGCGAGCCGG AGGGCGCGGC ATGA
 
Protein sequence
MQTLAFAPGP AFLSRAADAA WRFLDAHAQP PGTATIVVPT AAQIPGVRGA LHAGAQAAGT 
PRLLPRILTL GHWLLDLPPE AGSPAGRTPL SRLLAVQQAL KTLAWLREAL GAQDDAALWG
VAQVLVTVSD DLSQRWLTLD AAHSGADGRA DELESALAEA LERTYAQLSE RFLGTESRIV
LTFWRLLSGA ADPIPMRLRA MQRLLDELRG PIVWMSPTDP EAVDLDFLQR AAERVPVLSI
GYDWNAPESG ASAAPSTHAD FRNLLLHAWP ECATPAQAAD DAAAAQLPAP ILRIAGAARF
EDEAAFAAHT LVDWLNAGRR SLALVAQDRI VARRVRALLA RVNVPVRDET GWKLSTTRAA
AALMRWVDVV QGDGDTAALL DLIKSPFCLR DADAGTATPA WVAELERRVR RHNVSGGWGR
LRRLVTDRPA SDAEGEAKVS RLADRLGVLA DEAALWRRAG SAKLDAWVAL LAGTLDRLHM
RTGLQNDDAG RQLLDWIDRL RTSIHGSTDA GARYSLTEWR ALLSMLLESA VFSEPSPPAD
RRVVILPLNG ARMRRFDGVV VVGCDDAQLP SAQPEWLFFS NDVRRELGLP DRAQRFAQQA
RDLAEVLLNQ PEVVLTWQRH GGRGEPHRLS GWLERLQRRL AVSGVRIDTS VTLPSLQTTS
QPTDMPAPAA PTLVPSTLSA AAYNSLRRCP YQFFVGRMLR LGELEEVSDE LEKRDIGGIL
HAILHRFHRQ LLETPMHDPA DRLSLLQTIT DEQFGPLLAE DGNALRFYRR WLGVMPSYLA
WQAAREADGW RFEAGEVDVD TSITLSDERA LRLRGRIDRI DVHDEHGVAV LDYKTQSQMA
LVRRAKTPFE DCQLPFYGVL DARADSGGWV SLDGEARGDK RDVALPDFTQ VVDWLIEQMQ
KDMTALAAGA PLPAFGDESA CRYCAARGLC RKGYWTEGAP REPEGAA