Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0970 |
Symbol | |
ID | 8018602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1020517 |
End bp | 1023543 |
Gene Length | 3027 bp |
Protein Length | 1008 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644829749 |
Product | ribonuclease, Rne/Rng family |
Protein accession | YP_002980942 |
Protein GI | 241662582 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.100697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGCA TGTTGTTCAA TGCGACGCAG CAAGAAGAAT TGCGCGTCGC CATTGTCGAT GGTCAGAAAC TCATCGACAT CGACATCGAA ACCGCCGGGC GCGAACAGCG CAAAGGCAAT ATCTACAAGG GTGTCATCAC CCGCATCGAA CCGTCGCTGG AAGCGTGCTT CGTCAATTAC GGCGAAGAGC GACACGGTTT TCTCCCCTTC AAGGAAGTCG CCCGCGCCTA TTTCAAGGAC GGTGTGGACG TGCGCAATGC GCGCATCCAG GATGCGCTGC GCGAAGGCCA GGAGCTGATC GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCTG CCCTGACCAC CTTCATCTCG TTGGCTGGCC GCTACCTGGT TTTGATGCCG AACAACCCGC GGGGCGGCGG CGTGTCGCGC CGCATCGAGG GCGAAGACCG CCAGGAACTG CGCGAAACCA TGGCGCAGCT GGAAGTGCCG GACGGCATGA GCATCATCGC CCGCACCGCC GGCATCGGCC GCTCGGCTGA AGAGCTGCAG TGGGACTTGA ACTACCTGAT GCAGCTGTGG AAAGCCGTTG ACGGCGCTGC TGTCGACAAC AAGGCCCCGC TGCTGATTTA TCTCGAATCC AGCCTGGTGA TCCGGGCGAT TCGCGATTAC TTCCAGCCGG ATATCGGCGA AATCCTGATC GATACGGACG ATATCTACGA TCAGGCCCGC GCTTTCATGA GCGTGGTAAT GCCCGACAAC ATGAATCGGG TGAAGAAGTA CCGCGACGAC GTTCCCCTGT TCTCGCGCTT CCAGATCGAA CACCAGATTG AATCGGCGTA CTCGCGCATG GTCATGCTGC CCTCGGGCGG CGCAATTGTG ATCGACCACA CCGAGGCGCT CGTCGCCATT GACGTGAACT CGGCGCGCGC CACCAAGGGC GCCGATATCG AGGAAACCGC CGCGCGCACC AACCTCGAGG CTGCCGACGA AATCGCCCGC CAGCTCCGCC TGCGTGACCT CGGCGGCCTG ATCGTGATCG ACTTCATCGA CATGGAGTCG AGCAAGGCGC AGAAGGATGT CGAAACCCGC CTGAAAGACG CGCTGCGTCA CGACCGCGCC CGGGTGCAAA TGGGCAAGAT CAGCCGCTTC GGCCTAATGG AGCTGTCGCG CCAGCGCCTG CGTCCGTCGC TGTCGGAAGG CTCGCACGTC ACTTGCCCGC GCTGTAACGG CACGGGCCAC ATTCGCGATA CCGAATCGTC TGCCCTGCAG GTGCTGCGCA TCATCCAGGA AGAGGCGATG AAGGAAAACA CCGCCGCGAT CCACTGCCAG GTGCCGGTGG AAGTAGCCGC GTTCCTGCTC AACGAGAAGC GCCCGGACAT CAACCTGATC GAGACGCGCT TCAAGGTCAA CGTGTTGCTG ATCCCGAACA AGCATCTGGA GACGCCGCAC TACAAGCTGG AGCGCCTGCG CCACGACGAT CCGCGCCTGG ACGAAGACAA GGCCAGCTAC AAGATGGCCG AAGAGGCTGC CAAGGAACTG GAAGCCGACA CGGCTTACAG CACGCGCAAG GAAGCTGCCA AGCCGCGTCA GGAAGCCGCC GTCAAGGGCA TCACCCCGGA CCAACCGGCA CCCGTGTCGG TACCGCGTGC CGAGCGTCCG GCCCGTGCGG AAATTGCTCC GGCACCGCAA GCGCCGACTC CGGCTCCGGT CCCTGCCCAG CGTGGTTTTG TCTCGTGGCT GAAGGCGCTG TTTGGCGCCA AACCGGCCGA GCCGGTAGTG ACTGCACCGG TGGAAACGCC GAAGCAACGT GCTGAAGAAG GCAACCGCCA AGGCCGCGGC AATCGCCAGG ACCGTGGTGG GCGTGGCCAG CGTGGCGAGC GCCAAGGTCA AGGTCAGAAC GGCCGCGATG GCAGCCGCCA GGGCCGTGAG CGCAACGAAG CCCGTGAAGG ACAGCAACAA GTCCAGCGCG AAGGTCAACG TGACGGTCAG CGCGGCAACC GCGATCGCAA CCGCCAGCCG GCCCAGGTCG AAGGCGCTGT CCGCGAGGCG GCTGAAGCGC GCCAGCCGCA GCAAGGTCAG GAGGTTCGCT CCGAGGGTCA GAACCAGGGT CAAGGCCGCC GGGAGCGCAA CCAGGAACGT CGCGAGCGCC AACCGCGTGA GGGCCGAGAA GCCCGCGAGG GCCGGGAGCC GCGTGAGCCA CGTGAAAACC GCGAGCCGCG CGAAAACCGT GGCGAGCGCG ACCAACAAGC CAAGGAAGCC GCAGCCGTGG CCGCCGAAGC CCTGATCGAC CAGACCGCCG CATCGCAAGT GCCGCAACCG CTGCTCGACA CCGCTGCTCC GGTAGAAGGC ATCGAGGGCG AAGGCGTGAC GCCGGGCGCG GAGGGCAACG GTGAAGGTGA AGAGCGCCGG CGCCGTGGGC GCCGTGGCCG CAACCGCTAT CGCCGTGACC GCGAGGGCGC GGAAGGCGTC CGTGCGGAAG GTGAAGGTGA AGGCGAAAAC GAAGGCGCCG AAAGCGCAGA CGAAGCCGTC GCCGTCATGC ATGCCGAGCC GGTGCTGCCC GCAACCGTGA CGGAACCTGT GCTGACCGCT TCGTTCGCAC CGGTCGAAAA CCCGGCTCCG GTGGTGCACG AGCCGGTGCA TGCCGCGGAA GCCGTGGCAC CTGTGTCGGC ACTGCCGCAA GTGCAGCCGA CAGAGCCCGC GCTCGCGACG GCTGTTGCAG CGCCCGCGCC CGCACCCGCA GCGGCGGCGC CGCAAGAGGC CATCGTGACG GCGTTTGCCG AAGTGCCGGC ACCGGTCAGC ACGATCGCCC AGGCTTCGCC GCTGCCAATC GAGACGCTGC AAAGCGTGCT CGACAACGCT GGCATGACGT GGGTCCACAC CGATAGCCAG AAGCTGCGTG CGTCGCAGGA AGAAGCTGCG CGCACCGTTG CCGCGCCGCG TGTGCCCCGT GAACGCAAGC CGCTGCCGCC GATCCAGCAA GGCCCGATGA TCCTGGTCGA AACCAACCGC CCAGCGGCTG GCATGGACCA GCAGTAA
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Protein sequence | MKRMLFNATQ QEELRVAIVD GQKLIDIDIE TAGREQRKGN IYKGVITRIE PSLEACFVNY GEERHGFLPF KEVARAYFKD GVDVRNARIQ DALREGQELI VQVEKEERGN KGAALTTFIS LAGRYLVLMP NNPRGGGVSR RIEGEDRQEL RETMAQLEVP DGMSIIARTA GIGRSAEELQ WDLNYLMQLW KAVDGAAVDN KAPLLIYLES SLVIRAIRDY FQPDIGEILI DTDDIYDQAR AFMSVVMPDN MNRVKKYRDD VPLFSRFQIE HQIESAYSRM VMLPSGGAIV IDHTEALVAI DVNSARATKG ADIEETAART NLEAADEIAR QLRLRDLGGL IVIDFIDMES SKAQKDVETR LKDALRHDRA RVQMGKISRF GLMELSRQRL RPSLSEGSHV TCPRCNGTGH IRDTESSALQ VLRIIQEEAM KENTAAIHCQ VPVEVAAFLL NEKRPDINLI ETRFKVNVLL IPNKHLETPH YKLERLRHDD PRLDEDKASY KMAEEAAKEL EADTAYSTRK EAAKPRQEAA VKGITPDQPA PVSVPRAERP ARAEIAPAPQ APTPAPVPAQ RGFVSWLKAL FGAKPAEPVV TAPVETPKQR AEEGNRQGRG NRQDRGGRGQ RGERQGQGQN GRDGSRQGRE RNEAREGQQQ VQREGQRDGQ RGNRDRNRQP AQVEGAVREA AEARQPQQGQ EVRSEGQNQG QGRRERNQER RERQPREGRE AREGREPREP RENREPRENR GERDQQAKEA AAVAAEALID QTAASQVPQP LLDTAAPVEG IEGEGVTPGA EGNGEGEERR RRGRRGRNRY RRDREGAEGV RAEGEGEGEN EGAESADEAV AVMHAEPVLP ATVTEPVLTA SFAPVENPAP VVHEPVHAAE AVAPVSALPQ VQPTEPALAT AVAAPAPAPA AAAPQEAIVT AFAEVPAPVS TIAQASPLPI ETLQSVLDNA GMTWVHTDSQ KLRASQEEAA RTVAAPRVPR ERKPLPPIQQ GPMILVETNR PAAGMDQQ
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