| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0848 |
|---|
| Symbol | |
|---|
| ID | 8018479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 889144 |
|---|
| End bp | 890448 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644829627 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_002980821 |
|---|
| Protein GI | 241662461 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.823879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.296007 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACATC TCGACGTCGG TCCGCTGAAG ACGGCGCGCG GCACCATCAA GCTGCCGGGC
TCGAAAAGCA TCTCTAACCG TGTCCTGCTG CTCGCGGCAC TCGCCCAGGG CGAGACCGTG
GTGCGCGACC TACTGGATTC CGACGACACG CGCGTCATGC TCGAAGCGCT TGGCAAGCTG
GGTGTCTCGG TCGAAGGCCT GGGCGACAAC GCATACCGTG TCACTGGCAC CGCCGGCCGC
TTCCCGAACA AGTCGGCCGA CCTGTTCATG GGCAATGCGG GCACAGCCAT CCGCCCGCTG
ACGGCCGCGC TGGCGCTGCA AGGTGGCGAG TACACGCTGC ACGGCGTGCC TCGCATGCAC
GAACGGCCGA TCGGCGACTT GGTCGATGGC CTGCGCCAAG TCGGTGCGCG CATCGACTAC
ACGGGCAACG AGGGCTATCC GCCGCTGGCA ATCCACGCCG CGCCAGTCAA GATCGACGCG
CCGATCCGCG TGCGCGGCGA TGTGTCGAGC CAATTCCTGA CGGCATTGCT GATGGCGTTG
CCTCTGGTGG AGTCTGCGGG CAACGTCACC ATCGAAGTGG TGGGCGAGCT GATTTCCAAG
CCGTACATCG AGATCACGCT GAATCTGATG GCGCGCTTCG GCGTGCAGGT CGCGCGTGAC
GGCTGGGCGT CGTTCACGGT GCCGACCGGC GTGGCCTACA AAGCGCCGGG CGAGATCTTT
GTGGAAGGCG ATGCCTCGTC GGCGTCGTAC TTCCTTGCGG CCGGCGCGCT GGGCGGCGGG
CCGGTACGTG TGGAGGGCGT TGGCATGTCG AGCATCCAGG GCGACGTCCG CTTTGCCGAC
GCGCTGAACC GCATGGGCGC CAACGTGATG GCCGGCGGCA ACTGGATCGA AGTGCGCGGC
GCCGAACGCG ACGACGGCAA GCTGCACGCT GTCGAGTTGG ATTGCAACCA CATTCCAGAT
GCGGCCATGA CGCTGGCGGT GGCTGCGTTG TTTGCTGACG GCACGACTAC CTTGACGAAC
ATCGCAAGCT GGCGCGTCAA GGAAACCGAC CGCCTGAGCG CCATGGCCAC CGAACTGCGC
AAGCTTGGCG CCGAGGTTGA AGAGGGCGCG GACTACATTC GCGTGACGCC TCCGTCGCAA
TGGACGCCGC CGGCCGGTGG CATCGACACC TACGATGACC ATCGCATGGC GATGGCTTTC
TCGCTGGCAG CGTTCGGCCC GGTGCCGGTC CGTATCAACG ACCCGCGCTG CGTCGCCAAG
ACGTTCCCGG AATATTTCAC GGCGTTCGGC GGCATCACCG CCTGA
|
|---|
| Protein sequence | MEHLDVGPLK TARGTIKLPG SKSISNRVLL LAALAQGETV VRDLLDSDDT RVMLEALGKL
GVSVEGLGDN AYRVTGTAGR FPNKSADLFM GNAGTAIRPL TAALALQGGE YTLHGVPRMH
ERPIGDLVDG LRQVGARIDY TGNEGYPPLA IHAAPVKIDA PIRVRGDVSS QFLTALLMAL
PLVESAGNVT IEVVGELISK PYIEITLNLM ARFGVQVARD GWASFTVPTG VAYKAPGEIF
VEGDASSASY FLAAGALGGG PVRVEGVGMS SIQGDVRFAD ALNRMGANVM AGGNWIEVRG
AERDDGKLHA VELDCNHIPD AAMTLAVAAL FADGTTTLTN IASWRVKETD RLSAMATELR
KLGAEVEEGA DYIRVTPPSQ WTPPAGGIDT YDDHRMAMAF SLAAFGPVPV RINDPRCVAK
TFPEYFTAFG GITA
|
|---|
| |