Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0544 |
Symbol | |
ID | 8018170 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 575671 |
End bp | 576648 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644829323 |
Product | type II secretion system protein |
Protein accession | YP_002980521 |
Protein GI | 241662161 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.106661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCCGC TTGTGATCGG TTTTGCGCTG TCGGTCTTCA TCGCCATGAT GCTGGCCGTG TTGGCCGTCT ATCTGTGGTG GGATACCCGG CACAGCTCGG CGGCACGGCG TTTCAGCCAC CGCTTGAAGA TGGCACTCGC CAGCAGTGTC AGCCACGGAG GCACCGACAG CATCCTCAAG CAGCGCATGC TGAGTGAGTC CCCGGAAGTG GCGGCGATGC TCGGCCGACT GCCGCGCATC CAGACGCTGG ACCGCCGACT GCTGCAGTCC GGCCTTGATT GGTCGGTCTC GCGCTTCTTT GCATTGACGC TGATGGTGCC GGCAATGATC GCCATCGTTT TCTCGTTGTT CGACCCGCCC CCAATGACGC TGCTGGTGTT CGTGCTCGCC GGAGCATCCT TGCCTGCGCT CTATGTCATG CATCGTCGTA CCCGGCGCCT GCTCAAGCTG GAAGCGCAGT TGCCCGAAGC CACGGACCTC ATCAGCCGCG CGCTGCGGGC GGGTCACTCA CTGCCCGCAG CACTCGAGAT GGCCGGGACC GAGTTGCCCG CCCCCATCGG TGCGGAACTG GCCATCGTCT TCAGCCAGAT CAACTTTGGC GTTTCGATGA GCGACGCGTT TGCGGGGCTC ACCGACCGCG TTCCGGTGGA TGACCTGCGC TACCTCGTCA TCGCCATCCT GATCCAGCGT GAATCTGGCG GCAACCTGGC AGAGATCCTG GACAACGTGG GAAAACTGAT TCGCAAGCGC CTGCAATTGC TGGACAAGGT TCGCGTGCTG TCCGCCGAAG GCCGCCTGGG CGGCTGGATT CTGACCTTGC TCCCGCCCGT CATGGGCCTG GCGATCTACC TGCTGAACCC TGAGTTGATG TCGACGCTGT GGACCACCGA TGCAGGAATT CGTCTGCTGT GGTTCGCCAT CACCATGACA TGCCTGGGCA TGCTGTGGAT CCGGCAGATC GTCCGCATCC ATATCTGA
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Protein sequence | MDPLVIGFAL SVFIAMMLAV LAVYLWWDTR HSSAARRFSH RLKMALASSV SHGGTDSILK QRMLSESPEV AAMLGRLPRI QTLDRRLLQS GLDWSVSRFF ALTLMVPAMI AIVFSLFDPP PMTLLVFVLA GASLPALYVM HRRTRRLLKL EAQLPEATDL ISRALRAGHS LPAALEMAGT ELPAPIGAEL AIVFSQINFG VSMSDAFAGL TDRVPVDDLR YLVIAILIQR ESGGNLAEIL DNVGKLIRKR LQLLDKVRVL SAEGRLGGWI LTLLPPVMGL AIYLLNPELM STLWTTDAGI RLLWFAITMT CLGMLWIRQI VRIHI
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