Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0447 |
Symbol | |
ID | 8018073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 471941 |
End bp | 473644 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644829227 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002980425 |
Protein GI | 241662065 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.423925 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACCG TGCAGAGTGC ACCGAACGCG CCCGTCGGGC GTGTACAGCC CGCGCCCATG ACGAGGGAGG AGAAGAAGGT CATCTTTGCC TCGTCGCTGG GGACGGTGTT CGAGTGGTAC GACTTTTATC TTTACGGCTC GTTGGCGGCC ATCATCGCCA AGCAGTTCTT CTCGGGTCTG GACCCCACGG CGGGCTTCAT CTTTGCCCTG CTGGCCTTTG CCGCCGGCTT CCTGGTGCGC CCGTTCGGCG CGCTGGTGTT CGGCCGCCTG GGCGACATGA TCGGGCGCAA GTACACGTTC CTGGTGACCA TCGTCATCAT GGGTACGTCG ACGTTCATCG TCGGCCTGCT CCCGTCATAC GGCACGATTG GCGTTGCCGC GCCGATCATC CTGATCGCGT TGCGCATGCT GCAGGGTCTG GCGCTGGGCG GTGAGTACGG TGGCGCCGCC ACGTATGTCG CCGAGCACGC GCCGCACGGC CGCCGCGGTG CCTACACGTC GTGGATCCAG ACGACGGCCA CGCTCGGCCT GTTCCTGTCG CTGGTCGTCA TCCTGGCCGT GCGCGAACTG ACCGGCAAGG CGTTCGACGA CTGGGGCTGG CGCATCCCGT TCCTGGTCTC GATCCTGCTG CTCGCCACGT CGGTGTACAT CCGTTTGTCG ATGAGCGAAT CGCCGGCATT CCAGAAGATG AAGGCAGAGG GCAAGACCTC CAAGGCCCCG TTGACGGAAG CGTTCGGCCA ATGGCGCAAC CTGAAGATCG TGATCCTGGC GCTGATCGGT CTGACCGCCG GCCAGGCTGT GGTCTGGTAC ACGGGCCAGT TCTACGCGCT GTTCTTCCTC ACGCAGGTGC TGAAGGTCGA CGCATTCACG GCCAACGTGC TGATTGCCGT AGCGCTTGCC ATCGGCACGC CCTTCTTCGT GTTCTTCGGC TCGCTGTCGG ACCGCATCGG CCGCAAGAAG ATCATCATGG CCGGCTGCCT GCTGGCGGTG GTGACCTACT TCCCGCTGTT CAAGGCGCTC ACGCACTATG CCAACCCGGC GCTGGAGCGT GCACAGCAGA CCGCGCAGAT CACCATCACG GTCGATCCGA AGGAGTGCTC GTTCCAGGGC AGCCCGATCG CCCGCGAGGT GGACTTCCGC TCGTCTTGCG ACATCGCCAA GCGCACGCTA GCGCAGTCGT CGGCCAGCTA CGAGACGGTC GAAGGCCCGG CCGGCACGGT CGCATCGGTG TCGATCGCGG GTAAGCAGAT CAGCTCGCTC AACGCCACGC GCACGGCAGA CGGTCAGAGT TTCGACGCCG ACAGCAAGAC GAAGATCGCC GACTTCAAGA AGCAGGTGAG CGAGTCGCTC AAGGCGGCCA ACTACCCGGC CAAGGCCGAT CCCGCCCAGA TGAACACGGT CATGGTGCTG GTGATCCTGG TGATCCTGGT GATCTACGTG ACCATGGTCT ACGGCCCGAT CGCGGCAATG CTGGTGGAGA TGTTCCCGAC GCGCATCCGG TACTCGTCGA TGTCGCTGCC GTATCACATC GGCAACGGCT GGTTCGGGGG CCTGCTGCCG ACCATCTCGT TCGCCCTCGT GGCCCAGAAC GGCAATATCT ATCACGGTTT GTGGTACCCG ATCTGGATCG CGGCCATCAC CTTCGTGATC GGAGTGCTCT TCGTGCGCGA GACCAAGGAT GTGGATATTT ATCGCAACGA CTGA
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Protein sequence | MATVQSAPNA PVGRVQPAPM TREEKKVIFA SSLGTVFEWY DFYLYGSLAA IIAKQFFSGL DPTAGFIFAL LAFAAGFLVR PFGALVFGRL GDMIGRKYTF LVTIVIMGTS TFIVGLLPSY GTIGVAAPII LIALRMLQGL ALGGEYGGAA TYVAEHAPHG RRGAYTSWIQ TTATLGLFLS LVVILAVREL TGKAFDDWGW RIPFLVSILL LATSVYIRLS MSESPAFQKM KAEGKTSKAP LTEAFGQWRN LKIVILALIG LTAGQAVVWY TGQFYALFFL TQVLKVDAFT ANVLIAVALA IGTPFFVFFG SLSDRIGRKK IIMAGCLLAV VTYFPLFKAL THYANPALER AQQTAQITIT VDPKECSFQG SPIAREVDFR SSCDIAKRTL AQSSASYETV EGPAGTVASV SIAGKQISSL NATRTADGQS FDADSKTKIA DFKKQVSESL KAANYPAKAD PAQMNTVMVL VILVILVIYV TMVYGPIAAM LVEMFPTRIR YSSMSLPYHI GNGWFGGLLP TISFALVAQN GNIYHGLWYP IWIAAITFVI GVLFVRETKD VDIYRND
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