| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0401 |
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| Symbol | |
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| ID | 8018026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 417368 |
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| End bp | 419431 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644829180 |
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| Product | diguanylate cyclase/phosphodiesterase with MHYT sensor |
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| Protein accession | YP_002980379 |
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| Protein GI | 241662019 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.465852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGCCA GTAGTTACAA CCCTCTTCTC GTCCTGCTTT CCCTCTTCGT GGCCATCCTG
GCGTCGTATA CGGCGCTGGA TATGGCAGGA CGTGTCGTGA CCGCACAAGG CCAAGGCCGC
GCGGCGTTGT GGTGGCTCAT CGGCGGCGCC TCCGCCATGG GATTGGGCAT CTGGTCGATG
CACTTTGTCG GCATGCTCGC GCTGAACCTG CCGATCCCGG TTGGATATGA CGTCGATATC
ACATTGACCT CGCTCGCCAT TGGCATTGGG GCGTCAATAT TTGCGTTATG GCTGGTCAGC
CGGCGTGAAC TGCCGTGGCC CCGCTTGGCG GGCGGCGCCG TCCTCATGGG CGCAGGCGTG
GCGGGTATGC ATTACACCGG CATGGTCGCG CTGCGCATGA ACCCCGGCAT TCAATACGAC
CCCGCCAGGT TTGTGCTGTC GATCGTGATT GCCGTGCTGG CCTCGGGCGT GGCGCTGTGG
ATGGCGTTTC GCCTGCGGCA GCAGTCGCGA CGCGTTCGTG CGCTGCGTGC CGGTTCGGCG
GTGGTGATGG GCGTGGCGAT CGTCGGCATG CACTACGTGG GCATGGCCGC GGCGGCGTTT
CCATACGGCA GCGTGTGTGG CGCTGCGCAT ACCGGCGCGA GTGCCGAATG GCTGGCGCTG
GTCATCATCA TCGTGACGCT GGCGGTGCTG GCCATCGCGC TCATCATCTC GGTGCTGGAT
TTGCGCATGG AAGCGCGCAC CGCCTTGCTG GCGAACTCGC TGGCCGCAGC CAACAAGGAA
TTGGCCTACC TCGCGCTGCA CGACAACCTG ACCAAGCTTT CGAACCGCGT GCTGCTGGAA
GACCGTCTGA CCCAGGCGAT CCGCACGGCT GATCGCGAGA AGCGCCGCTT CGCAGTCATG
TTCATGGATC TGGACGGTTT CAAGGCCGTC AACGATGTCT ATGGCCACCA CGTGGGCGAT
CTGCTGCTGA TCGACGTCGC GCAGCGCATC GGCGCGCGGG TGCGGCAGCA GGACACCGTG
GCGCGTGTCG GCGGCGACGA ATTCGTCGTG CTCGCCTACG TGGACGATCC GGAAGATGCC
GGCACCCTGG CCGACGCGCT GCTGGAAGTC GTGCGCGAGC CCTTCATGGC CGGCGGTCAC
GAGTTGCGCG TCTCCACCAG CATCGGCATC GCGGTCTACC CTGGCGACGG CGGCAACCAG
CATGACCTGC TGACCAATGC CGATGCGGCG ATGTACCACG CAAAGGGTCT GGGCCGGAAC
GCCTACAGCT TTTTCGAGCC ATCGATGAAC GCCGACGTGC ATCAGCAGTT GCAGCTTGTG
CAAGACCTGC GACGCGCGGT CGAGCGGCAC GAACTCGTGC TGCATTACCA GCCGAAATTC
AATGCGCCCA ATGGGCCGAT CATGGGCGTG GAGGCGCTGG TGCGCTGGCA GCATCCGCAA
CGCGGCTTGG TGCCCGCCGA CGAATTCATC CCGCTGGCCG AAAAGACCGG TCTGATCGTG
CCGCTGGGCG CCTGGGTGCT GGACGAGGCC TGCCGCCAGA TGGCGCAATG GCAACGCGAG
GGGCACAGCG GCTGGAGCGT CGCCGTGAAT CTCTCCGCGC TGCAGTTCGG CCATGCCGCA
CTCATCGACA CCGTGCGCGA GACGCTCGCG CGCCATGCGC TGGACCCGCG CAGCCTGATG
CTGGAAATTA CAGAATCGAC CGCCATGCGG GATGTCGACG CGAGCCTGCA GATCCTGCAG
CAGCTCGACG CGATGGGCGT GCGGATTTCG ATCGACGATT TCGGCACCGG CTATTCGAGC
CTGCTGTACC TCAAGCGTTT GCCTGCCAGC GAGCTGAAGA TCGACCGCGG TTTTGTGCGC
GACCTGGCGC ACGACACGGA AGACGCAGCC ATCGTCTCGG CCATCGTGGC GCTGGGTCAG
ACGCTGAACC TGCGCATCGT CGCAGAAGGT GTGGAGACGG CCGAGCAGCA GGCGTTTCTG
ACGCGGCTCG GCTGCCACTC GCTGCAGGGC TACCTGCTCG GCCGCCCGAT GACGGCGGAA
TCGCTGAGCG CTGCGATGGC GTAA
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| Protein sequence | MLASSYNPLL VLLSLFVAIL ASYTALDMAG RVVTAQGQGR AALWWLIGGA SAMGLGIWSM
HFVGMLALNL PIPVGYDVDI TLTSLAIGIG ASIFALWLVS RRELPWPRLA GGAVLMGAGV
AGMHYTGMVA LRMNPGIQYD PARFVLSIVI AVLASGVALW MAFRLRQQSR RVRALRAGSA
VVMGVAIVGM HYVGMAAAAF PYGSVCGAAH TGASAEWLAL VIIIVTLAVL AIALIISVLD
LRMEARTALL ANSLAAANKE LAYLALHDNL TKLSNRVLLE DRLTQAIRTA DREKRRFAVM
FMDLDGFKAV NDVYGHHVGD LLLIDVAQRI GARVRQQDTV ARVGGDEFVV LAYVDDPEDA
GTLADALLEV VREPFMAGGH ELRVSTSIGI AVYPGDGGNQ HDLLTNADAA MYHAKGLGRN
AYSFFEPSMN ADVHQQLQLV QDLRRAVERH ELVLHYQPKF NAPNGPIMGV EALVRWQHPQ
RGLVPADEFI PLAEKTGLIV PLGAWVLDEA CRQMAQWQRE GHSGWSVAVN LSALQFGHAA
LIDTVRETLA RHALDPRSLM LEITESTAMR DVDASLQILQ QLDAMGVRIS IDDFGTGYSS
LLYLKRLPAS ELKIDRGFVR DLAHDTEDAA IVSAIVALGQ TLNLRIVAEG VETAEQQAFL
TRLGCHSLQG YLLGRPMTAE SLSAAMA
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