| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0280 |
|---|
| Symbol | |
|---|
| ID | 8017904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 289349 |
|---|
| End bp | 291286 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644829060 |
|---|
| Product | Tetratricopeptide domain protein |
|---|
| Protein accession | YP_002980259 |
|---|
| Protein GI | 241661899 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCACG CCCTCTCCCA TTCGCCCGCG ACGCAACGCC CGCGGCGATT CCCGCGCAGC
AGAACGGCCC TGCTGGCCGC GCTGGTGGCG GGAGGGCTGA CGAGCCTGCC GGCATGGTCG
TCGCAGTCGA CGGCCGTCGC CCCGCTGATC GCCCAAGCTG CAAAGGAAGA CGGCGCGGGT
GATCGCGCGG CCGTGCAGAT TGAACGCTCA CGCCCGCGCA CCGGCCTACT GAGTTCGGAG
CGGACGGATC TGCCGCGTGT CGCGCTCAAT GAAGACATCA TGTACCGCGT GCTGGCATCG
GAAGTGTCGC TGCAGCGGGG GTTGGTCGAA CCGGCGTACC GCACCTATCT TGCGCTCGCG
CAAGATACGC GCGACCCCCG CTTTGCCCAG CGGGCGACCG AAATCGCGTT TCTGACGCGC
TCGCCCGCGC AAGCGATGAC CGCGGCGCGC CTGTGGGTGG AACTGTCGCC GACGTCGATG
CCGGCTCGCC AGGTACAGCA GCTCTTGCTC GTGGCCACTG GCCAGTGGTC GGAAGTCGAA
CCGATGCTGC AGGCGCAATT GAACAAGGTC TCGCCGGGCC AGCGTGCCGA TGCCTTGCTG
CAATTGCAGC AGCAGATGTC CAAGAGCAGC GATCCGGCAG GTGCCGTCGG TGCGCTGCAG
CGCATCGCCT CGCATGACAT GCAGCGCCCC GAAACGCATC TGGCCTTGGC CCGCGCGAAG
GTCGCCGCCA AGGACACCGC CGGCGCACTG ACGGAACTGG ACACCGCGCT CAAGCTGCGT
CCCGGGTATG AAGACGCCGC CATCCTCGCC GCCGAACTGC GTGCCGACAG CGACCCCGAT
GCCGCCATCA CTGGCCTGCG CAGCTTCCTG AAAGCCGCGC CAGCGTCCAT CGACGGCCAC
CTGGCGCTCG CCCGCATGTA CCTCGTGCGC AATCAGCAGG ACAAGGCCCG CGCTGAATTC
GAAACGCTCA AGAAGATCGC GCCCAACGAT GCGCGCATCA CGCTTGCCCT GGGCCTGCTG
AATTTGCAGC AGCGCCAGTA CGACGACGCC GAGCGTTACC TGAAGGAATA CGTCACGGCC
ACCGCCAAGT CGCCCACCCT GAGCCCAGAA CCCGGCTACC AGGGCCTCGC CCAGTTGGCC
GAGGAGAAGC GAGACTACGC CGGCGCGCTC GGCTGGGTCG ACAAGATCAC CGGTTCCGCC
AACGGCGACG CCGACGGCCA GACCGCACTG GCGGCCGGCA TCAAGCGCGG CCAGTTGCTC
GGCAAGCTGC GCCGTATCGA CGAGGCGCAA CAGACCTTCG ATGAACTCGT CGCTGATTCC
GAAGACGTGC CCGATGGCCC GCGCCGCCAG GCCCTGATGG ACGGCATCCG CCAGGCCGAA
ATCGGCATGC TGATGGACGC CAAGGCTTAC GGCCGCGCCC GCGCCCGCGT CAATGAGCTG
CTCAAAAGCG ACCCGGACAA CGTCGAATAC ACGTATCAAC TGGCGATGCT CGAAGAGCAC
GACGGCCACT ACGACAACAT GGAGACGCTG CTGCGCAAGG TGATCGACCT GCGTCCCGGC
CAGGCCATCG GCTACAACGC GCTCGGCTAT TCGCTGGCCG ATCGCAGCGT GCGCCTGCAG
GAGGCGCAGG AGCTGCTGGA AAAAGCCGTA TCGCTGGCGC CGGATGATCC CTATATCGCC
GACAGCCTCG GCTGGGTCAA ATACCGTCGC GGCGATCTGC CCGGCGCCAC CGACATCCTG
CGCAAGGCGT GGGCTGCCGC CCCGCAAGCC GAAATCGGTG CGCACCTGGG CGAAGTGCTG
TGGCAATCGG GCAAGCAGGA CGACGCACGC CAAGTCTGGA CTGAAGCGTC CAAGCTTGAC
GTGAACGACA CCACGCTGCG CGACACGCTG CGCCGCTTCG GCCAGCCGGT ACCCAATGTT
CCCGTGAGTG CAAATTGA
|
|---|
| Protein sequence | MPHALSHSPA TQRPRRFPRS RTALLAALVA GGLTSLPAWS SQSTAVAPLI AQAAKEDGAG
DRAAVQIERS RPRTGLLSSE RTDLPRVALN EDIMYRVLAS EVSLQRGLVE PAYRTYLALA
QDTRDPRFAQ RATEIAFLTR SPAQAMTAAR LWVELSPTSM PARQVQQLLL VATGQWSEVE
PMLQAQLNKV SPGQRADALL QLQQQMSKSS DPAGAVGALQ RIASHDMQRP ETHLALARAK
VAAKDTAGAL TELDTALKLR PGYEDAAILA AELRADSDPD AAITGLRSFL KAAPASIDGH
LALARMYLVR NQQDKARAEF ETLKKIAPND ARITLALGLL NLQQRQYDDA ERYLKEYVTA
TAKSPTLSPE PGYQGLAQLA EEKRDYAGAL GWVDKITGSA NGDADGQTAL AAGIKRGQLL
GKLRRIDEAQ QTFDELVADS EDVPDGPRRQ ALMDGIRQAE IGMLMDAKAY GRARARVNEL
LKSDPDNVEY TYQLAMLEEH DGHYDNMETL LRKVIDLRPG QAIGYNALGY SLADRSVRLQ
EAQELLEKAV SLAPDDPYIA DSLGWVKYRR GDLPGATDIL RKAWAAAPQA EIGAHLGEVL
WQSGKQDDAR QVWTEASKLD VNDTTLRDTL RRFGQPVPNV PVSAN
|
|---|
| |