| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0260 |
|---|
| Symbol | |
|---|
| ID | 8017883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 272431 |
|---|
| End bp | 273132 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644829039 |
|---|
| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
|---|
| Protein accession | YP_002980239 |
|---|
| Protein GI | 241661879 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATT TCGTCGTCAC CCCGCCCGCC GTCAATGGCA TTCCCGTGCG TGGCGGGCAT
GGCCAGTTTC CGGTGCGCCG TGTGTACTGC GTCGGCCGCA ACTACGCCGC CCACGCGCGC
GAGATGGGTT CCGACCCCGA CCGCGAACCG CCGTTCTTCT TCTGCAAGCC GGCCGACGCC
GTGCGCTATA TCCCCGATGG CGAGACCGGC CAGTTCGTTT ACCCGACTGA AACCCGCGAT
TGCCACTACG AGATCGAACT CGTGGTCGCC ATCGGCACGG GCGGGCGCGA CATCGCCGTG
GAAACGGCAG CCAACCATGT CTACGGTTAC GCCATCGGCC TGGACATGAC GCGCCGCGAC
CTGCAGAACG CGGCAAAGAA GGGCGGCCGC CCCTGGGAGA CCGGCAAGGC TTTCGACGGC
TCGGCGCCCA TCGGCCCGAT CGTGCCGGCC AAGGATGTGG CGCATCCGGA CAAGGGCGCC
ATCACGCTGT CGGTCAACGG CCGCGAACAC CAGCGCGGTG ACCTGTCGGA CCTGATCTGG
TCGGTGCCGG AAACCATTGC GTATCTGTCG CGCCTGTTCG AGCTGCGCCC CGGCGATCTG
ATCTACACCG GCACGCCCGA AGGCGTTGGC CCGGTCGTCG TCGGCGACCT GATGGTCGGC
AAGATCGACG GCGTGGGAGA GCTGCACGTG AAGGTTATTT GA
|
|---|
| Protein sequence | MTDFVVTPPA VNGIPVRGGH GQFPVRRVYC VGRNYAAHAR EMGSDPDREP PFFFCKPADA
VRYIPDGETG QFVYPTETRD CHYEIELVVA IGTGGRDIAV ETAANHVYGY AIGLDMTRRD
LQNAAKKGGR PWETGKAFDG SAPIGPIVPA KDVAHPDKGA ITLSVNGREH QRGDLSDLIW
SVPETIAYLS RLFELRPGDL IYTGTPEGVG PVVVGDLMVG KIDGVGELHV KVI
|
|---|
| |