Gene Rpic12D_0189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0189 
Symbol 
ID8017812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp198747 
End bp199949 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content64% 
IMG OID644828971 
ProductSerine-type D-Ala-D-Ala carboxypeptidase 
Protein accessionYP_002980171 
Protein GI241661811 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1686] D-alanyl-D-alanine carboxypeptidase 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0133986 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.43472 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAACC GCTTCGCCCA TTTCACGCCC ATCGCCTTCC ATTCCGCCGC CGCAACCGCC 
GTGGCCGCCG CCGTGCTGGT CACCGCGCTG CCCGCCATGG CGCAGCCGGT GCCCGCCCCG
CAAGTCGCGG CCCGCTCGTG GATGCTGACC GACGTGACCA GCGGCCAGGT GCTCGGCGGC
GCCAACATGG ACGAACGCAT CGAGCCCGCC TCGCTCACCA AGCTGATGAC GGCCTACCTC
GTCTTCGAAG CCGTGCGCGA CGGCAAGCTC AAATACGACC AGATGATCAC GCCCACCGAG
ACCGTGCGCA CCGTCAAGAC CGACGAATCG CGCATGTTCC TGGAAGCCGG CAAACCGGCC
TCGGTGCGGG AGATGACGCA AGGCCTGATC ATCCAGTCTG GCAACGATGC AGCCCTCGTG
CTGGCTGAGG CCGTAGGCGG CACCGAGACG AACTTCGTGA TGCTGATGAA CCGCGAAGCC
GAGCGTCTGG GCATGAAGAA CACGCATTTC GCGAACGCCG CGGGCCTGCC TGATCCGAAC
CACTACTCCA CGGCACGTGA TCTTTCGATC CTGACCGCGG CGCTGATCAA GGATTTCCCG
CAGGACTACA AGTTCTACTC GCAGAAGGAA TTCACCTATA ACAACATCAA GCAGTCCAAC
CGCAACCGCC TGCTGTGGCT CGACCCGACC GTCGACGGCG GCAAGACGGG CCACACCAAG
TCGGCCGGCT ACTGCCTCGT CACCTCTGCC AACCGTCCGC TGCCGGACGT GCCGGGCGCG
AACCGTCGCT TGCTGTCGGT CATCATCGGC ACCAAGAGCG ACGCGATCCG CACGCAGGAG
AGCCTGAAGG TCCTGAACTA CGGCTATCAG TTCTTCGATA CCGTGCGCCT GTACCAGGCC
AAGGAAGCCC TGCAGACGCC CGACGTGTAC AAGGGCCAGG CCAAGAGCGT GAAACTCGGC
GTGGCGGAAG ACAAGTGGAT CACCGTGCCC AAGGGTGCAG GCGCACGCCT GAAGCCGGTG
CTGGAGCGCA AGGACCCGCT GATCGCCCCG ATCGCCCAGG GCCAGCAACT GGGCACGGTC
AAGGTGATGG ACGGCTCGAC CGTCGTGTCG GAATTCCCGG TGGTGGCACT GGAAGCGGTG
CCGGAAGCCG GCTTTATCGG CCGCACCATC GACGCGGTCA AGCTGTGGTT TAAAAAGAAG
TAA
 
Protein sequence
MQNRFAHFTP IAFHSAAATA VAAAVLVTAL PAMAQPVPAP QVAARSWMLT DVTSGQVLGG 
ANMDERIEPA SLTKLMTAYL VFEAVRDGKL KYDQMITPTE TVRTVKTDES RMFLEAGKPA
SVREMTQGLI IQSGNDAALV LAEAVGGTET NFVMLMNREA ERLGMKNTHF ANAAGLPDPN
HYSTARDLSI LTAALIKDFP QDYKFYSQKE FTYNNIKQSN RNRLLWLDPT VDGGKTGHTK
SAGYCLVTSA NRPLPDVPGA NRRLLSVIIG TKSDAIRTQE SLKVLNYGYQ FFDTVRLYQA
KEALQTPDVY KGQAKSVKLG VAEDKWITVP KGAGARLKPV LERKDPLIAP IAQGQQLGTV
KVMDGSTVVS EFPVVALEAV PEAGFIGRTI DAVKLWFKKK