Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0189 |
Symbol | |
ID | 8017812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 198747 |
End bp | 199949 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644828971 |
Product | Serine-type D-Ala-D-Ala carboxypeptidase |
Protein accession | YP_002980171 |
Protein GI | 241661811 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0133986 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.43472 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAACC GCTTCGCCCA TTTCACGCCC ATCGCCTTCC ATTCCGCCGC CGCAACCGCC GTGGCCGCCG CCGTGCTGGT CACCGCGCTG CCCGCCATGG CGCAGCCGGT GCCCGCCCCG CAAGTCGCGG CCCGCTCGTG GATGCTGACC GACGTGACCA GCGGCCAGGT GCTCGGCGGC GCCAACATGG ACGAACGCAT CGAGCCCGCC TCGCTCACCA AGCTGATGAC GGCCTACCTC GTCTTCGAAG CCGTGCGCGA CGGCAAGCTC AAATACGACC AGATGATCAC GCCCACCGAG ACCGTGCGCA CCGTCAAGAC CGACGAATCG CGCATGTTCC TGGAAGCCGG CAAACCGGCC TCGGTGCGGG AGATGACGCA AGGCCTGATC ATCCAGTCTG GCAACGATGC AGCCCTCGTG CTGGCTGAGG CCGTAGGCGG CACCGAGACG AACTTCGTGA TGCTGATGAA CCGCGAAGCC GAGCGTCTGG GCATGAAGAA CACGCATTTC GCGAACGCCG CGGGCCTGCC TGATCCGAAC CACTACTCCA CGGCACGTGA TCTTTCGATC CTGACCGCGG CGCTGATCAA GGATTTCCCG CAGGACTACA AGTTCTACTC GCAGAAGGAA TTCACCTATA ACAACATCAA GCAGTCCAAC CGCAACCGCC TGCTGTGGCT CGACCCGACC GTCGACGGCG GCAAGACGGG CCACACCAAG TCGGCCGGCT ACTGCCTCGT CACCTCTGCC AACCGTCCGC TGCCGGACGT GCCGGGCGCG AACCGTCGCT TGCTGTCGGT CATCATCGGC ACCAAGAGCG ACGCGATCCG CACGCAGGAG AGCCTGAAGG TCCTGAACTA CGGCTATCAG TTCTTCGATA CCGTGCGCCT GTACCAGGCC AAGGAAGCCC TGCAGACGCC CGACGTGTAC AAGGGCCAGG CCAAGAGCGT GAAACTCGGC GTGGCGGAAG ACAAGTGGAT CACCGTGCCC AAGGGTGCAG GCGCACGCCT GAAGCCGGTG CTGGAGCGCA AGGACCCGCT GATCGCCCCG ATCGCCCAGG GCCAGCAACT GGGCACGGTC AAGGTGATGG ACGGCTCGAC CGTCGTGTCG GAATTCCCGG TGGTGGCACT GGAAGCGGTG CCGGAAGCCG GCTTTATCGG CCGCACCATC GACGCGGTCA AGCTGTGGTT TAAAAAGAAG TAA
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Protein sequence | MQNRFAHFTP IAFHSAAATA VAAAVLVTAL PAMAQPVPAP QVAARSWMLT DVTSGQVLGG ANMDERIEPA SLTKLMTAYL VFEAVRDGKL KYDQMITPTE TVRTVKTDES RMFLEAGKPA SVREMTQGLI IQSGNDAALV LAEAVGGTET NFVMLMNREA ERLGMKNTHF ANAAGLPDPN HYSTARDLSI LTAALIKDFP QDYKFYSQKE FTYNNIKQSN RNRLLWLDPT VDGGKTGHTK SAGYCLVTSA NRPLPDVPGA NRRLLSVIIG TKSDAIRTQE SLKVLNYGYQ FFDTVRLYQA KEALQTPDVY KGQAKSVKLG VAEDKWITVP KGAGARLKPV LERKDPLIAP IAQGQQLGTV KVMDGSTVVS EFPVVALEAV PEAGFIGRTI DAVKLWFKKK
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