Gene Rpic12D_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0016 
Symbol 
ID8017639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp18693 
End bp19640 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content67% 
IMG OID644828800 
Productprotein of unknown function UPF0187 
Protein accessionYP_002980000 
Protein GI241661640 
COG category[S] Function unknown 
COG ID[COG3781] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.742789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGTCC GCCCCCATCT GCACTGGTTC CGCATGCTGC TCGCATGGCG CGGATCGGTG 
TTGCCGCAGC TTCTGCCGCG CCTGTTCCTG ATCTTCTTCG TGTCGTTGGT GGCCATCGCG
GTGCATGCGC ACCTGCTGCC CGTCTCCGTC AACCTGAGCA CGACGCCGTT CTCGCTCGTC
GGCATTGCGC TGGCGGTGTT CCTGGGCTTT CGCAACAACG CCAGCTACGA CCGCTACTGG
GAGGCCCGCA AGCTCTGGGG CCAGTTGCTC AACACGGCGC GATCGCTCAC GCGCCAGGCG
CTGACGCTGC CGCGCGGCGA TGGCCCGCAT GACACCAGCG GTCCCGCAGC CGATGCCGAC
GTGCGCGAGT TCGCACAGGT GCTGGGCGCG CTGCCGCACG CGCTGCGCCA CCAGTTGCGC
CACACCGATG CACGCGACGA CCTCGCCGCC CGCCTGCCCG TGCCGTTGCT CGAGCGCGTG
ATGGCCTCGC GCTACCGGCC CATCGCCATC GTGCAGTGGC TGGGTGAATG GGTGCAGCGT
CGCGCGCAAG CCGGTACCGT TGATGGGTAT GCCGCCCTGG CGTTCGACCG CAACCTCAAC
GAGTTGTCGA ACAGCATCGG CGGGTGCGAG CGCATTGCGG GCACGCCGCT GCCGTTTGCT
TACTCGGTCA TGATCCACCG CACGGTGTAC TTCTTCTGCG CGGCACTGCC GTTTGGGCTG
GTGGAAAGCA TCGGCAGTTT CACGCCCGTG TTTGCGGTGT TCGTGGCGTA CACCTTCATG
GCGCACGAGG CCATCGCCTC GCAGCTCGAA GACCCGTTCG GCACCGAAGA CAACGACCTC
GCGCTCAACG CGCTGTCCAA CACGATTGAA GATGCGGTGC TCGACATCCT TGGCGAGCCG
AGCCCGCTGC CGCGTGCGGG CGTGCGGCGT GGGGTGATCT TCGATTGA
 
Protein sequence
MVVRPHLHWF RMLLAWRGSV LPQLLPRLFL IFFVSLVAIA VHAHLLPVSV NLSTTPFSLV 
GIALAVFLGF RNNASYDRYW EARKLWGQLL NTARSLTRQA LTLPRGDGPH DTSGPAADAD
VREFAQVLGA LPHALRHQLR HTDARDDLAA RLPVPLLERV MASRYRPIAI VQWLGEWVQR
RAQAGTVDGY AALAFDRNLN ELSNSIGGCE RIAGTPLPFA YSVMIHRTVY FFCAALPFGL
VESIGSFTPV FAVFVAYTFM AHEAIASQLE DPFGTEDNDL ALNALSNTIE DAVLDILGEP
SPLPRAGVRR GVIFD