Gene Rpic12D_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0001 
SymboldnaA 
ID8021147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp613 
End bp2202 
Gene Length1590 bp 
Protein Length529 aa 
Translation table11 
GC content63% 
IMG OID644828786 
Productchromosomal replication initiation protein 
Protein accessionYP_002979986 
Protein GI241661626 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGATT TCTGGCATGC GGCGTCCGCT CAACTCGAAA GTGAGCTGAC GCCGCAACAA 
TTCAAGACGT GGATCAAGCC GCTGACGCCG CTGTCGTTTG ACGAGCAGGC GTGCACGCTG
CGGATTGCCG CGCCCAACCG TTTCAAGCTC GACTGGGTCA AGAGCCAGTT CTCGGGCCGC
ATCCAGTCGC TCGCGTGCGA CTACTGGGAG GCGACGGTCG ACGTGCAGTT CGTGCTCGAC
CCGACCGCCG GCCAGCGCCA GGCGGCGCTT CAGCCGGCGC TCGCGCCAGT GCCGATGCAG
CCGCTGGGGG CGCAAGCAGG TCAACAGCGG CAGGCAATGC CGGCCGGCAA CGGTGTCTCG
CATGACGCTG CCACGCTGCG CCCCGCGCCG TCCGTGTATC GCGAAACCGC GCTGGCAACG
GCTAGCCATG CCGCCGCCGA TATCGACGTG CCCGTGATGG ACGCCGCCGA GGTTAGCGCC
CAGTCGTACC GCATGCCGCC GCAGGCGCCC GCCGTGGTCA CGAGCCTGGC CGCGCCGCCG
CAGGCGCCGG TGGACGATTC CGTGCATGAG CGCTCGCGCC TGAACCAGAT CCTGACGTTC
GACAACTTCG TCACCGGCAA GGCGAACCAA CTGGCGCGCG CTGCCGCCAT TCAGGTCGCC
AACAACCCGG GCAAGTCGTA CAACCCGCTG TACCTGTATG GCGGTGTCGG CCTTGGCAAG
ACGCACTTGA TTCATGCCAT CGGCAACTTC ATGCTGATGG AGAACCCGCG TGCGCGCATC
CGCTACATCC ACGCGGAGCA GTACGTGTCG GATGTGGTGA AGGCGTACCA GCGCAAGGCG
TTTGACGATT TCAAGCGCTA CTACCACTCG CTCGATCTGC TGCTGATCGA TGACATCCAG
TTCTTCTCGG GCAAGAACCG CACGCAGGAA GAATTCTTCT ACGCGTTCGA GGCGCTGATC
GCCAACCGGG CGCAGGTCAT CATCACCAGC GATACATATC CGAAAGAGAT CACCGGCATC
GACGACCGCC TGATCTCGCG CTTCGACTCC GGCCTGACCG TGGCGATCGA GCCGCCCGAG
CTGGAAATGC GCGTTGCGAT TCTGATGAAG AAGGCGCAGG CCGAGAACGT GACCGTGCCG
GAAGAGGTGG CCTTCTTCGT GGCCAAGCAC CTGCGCTCGA ACGTGCGAGA GCTGGAAGGC
GCGCTGCGCA AGATCCTGGC GTACTCCAAC TTTCACGGTA AAGAGATCAC GATCGAGGTC
ACGCGCGAGG CGTTGAAAGA CCTGCTGACC GTGCAGAACC GCCAGATCTC GGTGGAGAAC
ATCCAGAAGA CCTGCGCGGA TTTCTACAAC ATCAAGGTCG CGGATATGTA CTCCAAGAAG
CGGCCGGCCA ACATCGCGCG CCCGCGTCAG ATCGCCATGT ATCTGGCCAA GGAACTCACG
CAGAAGAGCC TGCCCGAGAT TGGCGAACTG TTCGGCGGAC GCGACCACAC CACGGTGCTG
CACGCCGTAC GAAAGATCGC CGACGAGCGC ACCAAGGACG CCCAGCTCAA CCATGAGTTG
CACGTGCTGG AGCAAACGCT CAAGGGCTGA
 
Protein sequence
MQDFWHAASA QLESELTPQQ FKTWIKPLTP LSFDEQACTL RIAAPNRFKL DWVKSQFSGR 
IQSLACDYWE ATVDVQFVLD PTAGQRQAAL QPALAPVPMQ PLGAQAGQQR QAMPAGNGVS
HDAATLRPAP SVYRETALAT ASHAAADIDV PVMDAAEVSA QSYRMPPQAP AVVTSLAAPP
QAPVDDSVHE RSRLNQILTF DNFVTGKANQ LARAAAIQVA NNPGKSYNPL YLYGGVGLGK
THLIHAIGNF MLMENPRARI RYIHAEQYVS DVVKAYQRKA FDDFKRYYHS LDLLLIDDIQ
FFSGKNRTQE EFFYAFEALI ANRAQVIITS DTYPKEITGI DDRLISRFDS GLTVAIEPPE
LEMRVAILMK KAQAENVTVP EEVAFFVAKH LRSNVRELEG ALRKILAYSN FHGKEITIEV
TREALKDLLT VQNRQISVEN IQKTCADFYN IKVADMYSKK RPANIARPRQ IAMYLAKELT
QKSLPEIGEL FGGRDHTTVL HAVRKIADER TKDAQLNHEL HVLEQTLKG