Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5301 |
Symbol | |
ID | 6413002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5720670 |
End bp | 5722355 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642715190 |
Product | hypothetical protein |
Protein accession | YP_001994262 |
Protein GI | 192293657 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCGAA TCCTTGTTAC CGTAGTCACG CTCGTGGCGG TCATCCCTCC GGCCGCGGCG GCCGACATGC CGCGCTTTCC TCCGCTCATG CCCGTTGCGC CGGTGTCGTG GAATTGGACG GGCCTGTATT GGGGCGCCCA TGTCGGCGGC AGCTTCGGCT CATCGAGCTT CAGCGATCCC GCTGGCCCCG CTCTCTACGG CGGCAGCGTC CGCAGCCCGG CTGCGCTGGC AGGCATCCAG ATCGGCTACA ACTATCAGCC GAACGCGAAT TGGCTGATCG GCGTCGAGGC CGATCTCAGT TCGATGAACG CCAAGGGCAC CAACACTTGC ATGGCGTCGT CGGGGTTGTT CATTTCGTCC AATTGCCGCG TCCGCCAGGA TGCGCTGGCG ACGCTGACCG GCCGTGCCGG CTTCGTCGCC GGTCCCGGCG GCCGCACGCT GCTCTACGCC AAAGGCGGCG CGGCTTTCCT GAGTGAACGG CTCGACATCG CCGTCGGCTA TCCGCTCGGC AACTCGACCG ACGTCAACGA CGGTCGGTGG GGCTGGACCG TCGGTGCCGG CATCGAACGG GCGCTGGCGC CGGCCTGGTC GGTGAAGCTC GAATACAACT ACGCCGATTT CGGCAGCCGC GACATGGCGA CACCGGACAG CGAACGGCTG GTGCCGGGCG TCGGTTCTTT CGCCACGCCG CAGGGCAGGA GCAGGGTCGA GCAGGACCTG CATGCGGTGA AGGTCGGCCT CAACCTCAAA TTCGGCGGCG ATGTCGACGC ACGCTTCGAC GACTATCATC TGCGCGGCAC CCAGGCCGGG GTCGATGTCG TCGAGCGCGG CGCGGTCGAG GTCGGCGGTC GCGTCTGGTA TAGTTCGGGT CGTTTCCAGA AAGATCTCGG CGGCACATTC GATCAGGGCA ATCAGAATTT CCTGATCTCG CGGTTGACCT ATCAAAATAC CGCTGTGTCG GGGGAGGCTT TCGGTCGTAT CGAAGGTCCC TACGACACCT TCCTCAAGGG CTTTGCCGGC GGCGGCACGC TATTGAGTGG ACATATGAAC GACGAGGACT GGATCGCCTC CGACGGCATC CCCTATTCGA ATACGCTGTC GGATCCGGTT AGGGGCAGCA TCGCCTATGC GACTGTGGAT GTCGGCTACA ATCTGGTGCA CGGGCCGGAC TACAAATTCG GCGGCTTCGT CGGTTACAAT TATTATCGCG AGAACAAATC GGCCTATGGC TGCGTGCAGA CGGCAGGCGC CACGTCGCTG GTCTGCGCGC AACCGATTTC GGATGCAGTT CTCGCCATCA CCCAGAACGA CACCTGGCAT TCGTTGCGGG TCGGCCTCAA CGGTGAGATC GGGCTCGGTC GTGGGGTCAA GCTCTCGGCG GATGCGGCCT ATCTGCCGTA TGTGAAGACC TTCGGAACCG ATACGCATCT GCTGCGGACC GACGTCGCCG ACAAAGTGTC GCCGTCACAG GGCACGGGGC AGGGCGTCCA GCTCGAAGCC ATCCTGTCGT ATCAGTTGAA CAGCGCTTTC AGCATTGGCG CCGGTGCGCG GTATTGGGCG ATGTGGGCGA CCACCAACGC CTACACCAAT ATCTTCGGCA CGGAGTGTCC CTGTCAGACC CAGCCGGCGC GCACCGAGCG CTATGGAACC TTTTTGCAAG CGGCTTATAA GTTCGACAGC CTCTAA
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Protein sequence | MSRILVTVVT LVAVIPPAAA ADMPRFPPLM PVAPVSWNWT GLYWGAHVGG SFGSSSFSDP AGPALYGGSV RSPAALAGIQ IGYNYQPNAN WLIGVEADLS SMNAKGTNTC MASSGLFISS NCRVRQDALA TLTGRAGFVA GPGGRTLLYA KGGAAFLSER LDIAVGYPLG NSTDVNDGRW GWTVGAGIER ALAPAWSVKL EYNYADFGSR DMATPDSERL VPGVGSFATP QGRSRVEQDL HAVKVGLNLK FGGDVDARFD DYHLRGTQAG VDVVERGAVE VGGRVWYSSG RFQKDLGGTF DQGNQNFLIS RLTYQNTAVS GEAFGRIEGP YDTFLKGFAG GGTLLSGHMN DEDWIASDGI PYSNTLSDPV RGSIAYATVD VGYNLVHGPD YKFGGFVGYN YYRENKSAYG CVQTAGATSL VCAQPISDAV LAITQNDTWH SLRVGLNGEI GLGRGVKLSA DAAYLPYVKT FGTDTHLLRT DVADKVSPSQ GTGQGVQLEA ILSYQLNSAF SIGAGARYWA MWATTNAYTN IFGTECPCQT QPARTERYGT FLQAAYKFDS L
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