Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5284 |
Symbol | |
ID | 6412985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5700162 |
End bp | 5701301 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642715174 |
Product | acyl-CoA dehydrogenase domain protein |
Protein accession | YP_001994246 |
Protein GI | 192293641 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.245175 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTCTCG TCCTCACTGA AGAACAAACC ATGCTGCGCG ATTCCGCGCG CGGGCTGATC GGCGACAAGG CGCCGGTCGC TCAGTTGCGC AAGCTACGCG ACGAGCGTGA CGCCACCGGC TTCTCGCGCG ACTTGTGGAA GAGCTTCGCC GAGATGGGCT TTGCCGGCCT GCTGGTGCCG GAGGAGTTCG GCGGCTCGGG GCTCGGCTGC GTCGAGGCCG GCGTGGTGAT GGAGGAGATC GGCCGCAACC TGACGCCGTC GCCGCTGCTG TCGACCGCGA TCCTGGCTGC TTCTGCATTG GCGCGCGGCG GCTCGGAAGT GCAGAAGAAG GCTTATCTGC CGAAGATCGC CGACGGCTCG TTGATCGCAG CGCTTGCGGT CGACGAGGGC GCCAAGCACC GGCCCGCGAA GATCGCGATG ACCGCGACGC GCGCCGGCAA CGGCTTTCGG CTGAAGGGCG ACAAGGCGCT GGTGGTCGAT GGCCACGTTG CCGACCTTCT GATCGTCGCG GCGCGCAGCG CCGGTCAGCC GGGCGATGCG GATGGACTGA CGCTGTTCCT GGTCGACCCG AAGGCGAAGG GCGTTGCGAT CGAGCGCACC GTGATGGTCG ACGCCCACAA CGCAGCGCGT ATCACTTTCG ACGACGTCGA GGTGAATGCC GATCAGGTGC TCGGCGAGGT CGATCGCGGC GGCGCGCTGC TCGAGGTGGT ACTGAACGTC GGCCGCGCGG CGGTTGCCGC CGAAATGCTC GGCGTCGCGG ATGAGGCGTT CGGGCGGACA GTGAGCTATC TGAAAGAGCG TAAGCAGTTC GGAAAGCTGA TCGGCGAATT CCAGGCGCTG CAGCACCGCG CCGCGCATCT CTACACCGAG ATCGAAATCC TTCGCGCCGC CGTGCTCAAG GCGCTGCAGG CAGTCGATGC GGACGCCGCG CAGGCGCGGA TCGCGGTTTC GGTCGCCAAG GCCAAGGCCG GCACGGTGAC GACGCTCGCG GTGCAGGAAG GCGTGCAGAT GCATGGCGGC ATGGGCATGA CCGACCAGTT CGACATCGGC CTGTTCATGA AACGCGCGCG CGTTCTGCAG GAACTGCTCG GCGACAGCGC CTACCACGCC GAAGCGCTGG CGGAGTGGAA GAAGTACTGA
|
Protein sequence | MALVLTEEQT MLRDSARGLI GDKAPVAQLR KLRDERDATG FSRDLWKSFA EMGFAGLLVP EEFGGSGLGC VEAGVVMEEI GRNLTPSPLL STAILAASAL ARGGSEVQKK AYLPKIADGS LIAALAVDEG AKHRPAKIAM TATRAGNGFR LKGDKALVVD GHVADLLIVA ARSAGQPGDA DGLTLFLVDP KAKGVAIERT VMVDAHNAAR ITFDDVEVNA DQVLGEVDRG GALLEVVLNV GRAAVAAEML GVADEAFGRT VSYLKERKQF GKLIGEFQAL QHRAAHLYTE IEILRAAVLK ALQAVDADAA QARIAVSVAK AKAGTVTTLA VQEGVQMHGG MGMTDQFDIG LFMKRARVLQ ELLGDSAYHA EALAEWKKY
|
| |