Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5254 |
Symbol | |
ID | 6412955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5666271 |
End bp | 5667536 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642715144 |
Product | hypothetical protein |
Protein accession | YP_001994216 |
Protein GI | 192293611 |
COG category | [S] Function unknown |
COG ID | [COG4645] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.15377 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTCCTC CTGTCACCAC CGTTGCCGAG CCGGTCACCG GCGCGCCGCC CGCAGGCGGT CCGCCGACGG AGCCGGCTGC GCCACCACCG CTGCCGGCGG CCTCGCCGCC GCGCAAGGTG GTGCCGAAAC GGGAACTGCG GCTCGATCTG TTCCGTGGCC TGGCTCTGTG GCTGATCTTC ATCGACCATC TGCCGGCCAA CGTGCTGACC TGGTTCACGC TGCGGAATTA CGGCTTCTCC GACGCCACCG AGATCTTCAT CTTCATCTCC GGCTACACGG CCGCCTTCGT CTACGGCAAG GCGATGACCG AACTCGGCTT CGTCGTGGCG GCGGCGCGCA TCCTCAAGCG GGTCTGGCAG ATCTACGTCG CGCACGTGTT CCTGTTTACG ATCTTCCTGG CCGAGATCTC TTACGTCGCC ACCAGCTTCC AGAACCCGCT GTACTCCGAG GAAATGGGCA TCCTCGACTT CCTCAAACAG CCCGACGTCA CCATCGTGCA GGCCCTGCTG CTGCGGTTTC GCCCCGTCAA TATGGACGTG CTGCCGCTGT ACATCGTGCT GATGTTCTTC CTGCCGCCGA TCCTGTGGCT GATGCGACGC TGGCCCGACA TCACGCTGGG GCTGGCGACG CTGCTCTACG CCGCGACCTG GCAGTTCGAC CTGCATCTGA CCGCATATCC GAGCGGCGCA TGGGTGTTTA ATCCGTACGC TTGGCAGTTG CTGTTCGTGT TCGGCGCCTG GTGTGCGATG GGCGGGGCGA AGCGGCTGTC GCGGGTGCTG GCGTCGAAAG TGACGCTGTG GCTGGCGGCC GCCTATCTGG TGGCAGCGTT CTACGTCACG CTCACCTGGT ACACGCCGCA GTTGTTCCAT ACCCTGCCGA AATGGCTCGA GCAGTGGATG TACCCGATCG ACAAGCCCAA CCTCGACGTG CTGCGGTTCG CGCACTTCCT GGCGCTGGCG GCTCTCACGG TGCGGTTCAT TCCGCGCGAT TGGCCGGCCT TGAACTCGCC CTGGTTGCGG CCGTTAATCC TATGCGGCCA GCACTCGCTG GAGATCTTCT GCATTGGCAT CTTTCTCGCT TTCGCCGGCT ATTTCATCCT GGCGGAAGTC TCGGGCGGCG CGGTGCTGCA TTTCTTCGTC AGCGTGACAG GGATTTGCAT CATGTCTGCC GCCGCGTGGC TGTTCTCGTG GTACAAGAAT GTGGCGAGCA AGGCCGGGTC CCGGACACCA CCGGATGCGG ACCTCGCGGG AGGCGATGCA GCATGA
|
Protein sequence | MTPPVTTVAE PVTGAPPAGG PPTEPAAPPP LPAASPPRKV VPKRELRLDL FRGLALWLIF IDHLPANVLT WFTLRNYGFS DATEIFIFIS GYTAAFVYGK AMTELGFVVA AARILKRVWQ IYVAHVFLFT IFLAEISYVA TSFQNPLYSE EMGILDFLKQ PDVTIVQALL LRFRPVNMDV LPLYIVLMFF LPPILWLMRR WPDITLGLAT LLYAATWQFD LHLTAYPSGA WVFNPYAWQL LFVFGAWCAM GGAKRLSRVL ASKVTLWLAA AYLVAAFYVT LTWYTPQLFH TLPKWLEQWM YPIDKPNLDV LRFAHFLALA ALTVRFIPRD WPALNSPWLR PLILCGQHSL EIFCIGIFLA FAGYFILAEV SGGAVLHFFV SVTGICIMSA AAWLFSWYKN VASKAGSRTP PDADLAGGDA A
|
| |