| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5230 |
|---|
| Symbol | |
|---|
| ID | 6412930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5641642 |
|---|
| End bp | 5642523 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642715120 |
|---|
| Product | 3-hydroxybutyryl-CoA dehydrogenase |
|---|
| Protein accession | YP_001994193 |
|---|
| Protein GI | 192293588 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.101624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAG CAATCAAAAA AGTCGGCGTA ATCGGCGCGG GACAGATGGG CAACGGCATC
GCCCACGTGG CCGCCCTCGG CGGGTTCGAC GTGATCCTGA ACGACGTCTC TGCCGACCGG
CTGAAATCGG CGATGGCCAC CATCAACGGC AACCTGTCGC GCCAGATCGC CAAGAAGCTC
ATCTCCGAAG ACGCCCGCAA GCAGGCCCTG GCGCGGATCA CCGCGACGGA GAAGCTGGAC
GGGCTGTCCG ACTGCGACCT CGTGATCGAG ACCGCGGTCG AGAAGGAAGA GACCAAGCGC
AAGATCTTCA ACGAGCTGTG CGCGGTGCTG AAGCCGGAGG CGATTGTCGC CTCCAACACC
TCCTCGATCT CGATCACCCG TCTGGCCGCC TCGACCGATC GGCCGGAGCG CTTCATCGGC
ATTCACTTCA TGAATCCGGT GCCGGTGATG GAGCTGGTCG AGCTGATCCG CGGCATTGCC
ACCGACGACG CAACGTTCGA GACTGCGAAG GCGTTCGTCA CCAAGCTCGG CAAGCAGATC
GCGGTGTCCG AGGATTTCCC GGCGTTCATC GTCAACCGCA TCCTGCTGCC GATGATCAAC
GAGGCGATCT ACACGCTGTA CGAAGGCGTC GGCAACGTCG AAGCCATCGA CATGGCGATG
AAGCTCGGCG CGCATCATCC GATGGGCCCG CTGGAGCTGG CCGACTTCAT CGGCCTCGAC
ACCTGTCTGT CGATCATGCA GGTGCTGCAC GAGGGCCTCG CCGACTCCAA GTATCGGCCG
TGCCCGCTGC TGGTGAAGTA CGTCGAAGCC GGTTGGCTCG GCCGCAAGAC CCAGCGCGGT
TTCTACGACT ACCGCGGCGA CAAGCCGGTT CCGACCCGCT GA
|
|---|
| Protein sequence | MAAAIKKVGV IGAGQMGNGI AHVAALGGFD VILNDVSADR LKSAMATING NLSRQIAKKL
ISEDARKQAL ARITATEKLD GLSDCDLVIE TAVEKEETKR KIFNELCAVL KPEAIVASNT
SSISITRLAA STDRPERFIG IHFMNPVPVM ELVELIRGIA TDDATFETAK AFVTKLGKQI
AVSEDFPAFI VNRILLPMIN EAIYTLYEGV GNVEAIDMAM KLGAHHPMGP LELADFIGLD
TCLSIMQVLH EGLADSKYRP CPLLVKYVEA GWLGRKTQRG FYDYRGDKPV PTR
|
|---|
| |