| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5174 |
|---|
| Symbol | |
|---|
| ID | 6412874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5577987 |
|---|
| End bp | 5579150 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642715064 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_001994137 |
|---|
| Protein GI | 192293532 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAGC CGCCGCTGTT TCGCCCGTTC ACCCTGCGTG GCATCACCAC CAAGAACCGC
ATCCTGATCT CGCCGATGTG CCAGTATTCC GCGGTCGATG GCGTGGCCAA CGACTGGCAC
CTGGTGCATC TCGGCAAATT TGCTCAGGGC GGCACCGGCA TCGTGATGGT CGAAGCGACC
GCGGTGACCG CCAATGGCCG CATCACCCAT GGCGATCTCG GGTTGTGGAA CGACGACCAG
ATCCGGCCGC TGGAGCGGAT CGCCGCCTTC CTGCGCGACA ACGGTGCGGT GCCGGCTATT
CAGCTTGCCC ACGCCGGCCG CAAGGCGAGC ATGCAGCGGC CTTGGTATGG CAATGCGGCG
CTGACCGCGG AGGACATCGC ACGCGGCGAC CAGCCGTGGG AGATCGTCGC GCCGAGCCCG
ATCCCGATGG ACGAAGGCTG GCTGACGCCG CAGGAACTGA CCGACGACGA TCTCGATCAT
CTGCTCGAGG CTTGGCGCAG TGCGACGCTG CGGGCGGTCG AAGCCGGGTT CGAGATGCTC
GAAGTGCACT GCGCCCACGG CTACCTGCTG CACTCGTTCC TGTCGCCGCT GTCGAACAAG
CGCACCGACG CCTACGGCGC GGACCGCGCC GGGCGGATGC GGTTTCCGCT GGAGGTGATC
GAGACGGTGC GTGCCGCCTG GCCCGACACG CTGCCGCTCG CGATCCGCGT ATCGTCGGTC
GACGGCGTTG ACGGCGGCAT TGAGCTGGCC GACTCGGTGG TGTTCGCGCG AGAGGCCAAG
GCCCGCGGTG CCGACATCAT CGATTGCTCG TCGGGCGGAT TGCTCGGCTC GGCGACCGCC
AACCGGATTC CGCGCGGCTA CGGCTTCCAG GTGCCGTTCG CCGAGGCCAT CCGGACCGAG
GCCGAAATCC CGACCATCGC GGTGGGGCTG ATCATCCATC CGGATCAGGC CGAGAAGATC
GTCGAGCAGG GCCAGGCCGA TCTGATCGCA ATCGGCCGCG AGGCGCTGTT CGATCCGAAC
TGGGCGCTGC ATGCGCAGCT CGAACTCACC GAGGGCGACG AGGTGTTCGC CGACTGGCCG
AAGCAATATG GTTGGTGGTT GGAGCGCCGC GAGTCGGGCT TGCGCAAGCT CGACGGGCCG
AAGCTGCCGT TCCGGCGAAG CTGA
|
|---|
| Protein sequence | MSQPPLFRPF TLRGITTKNR ILISPMCQYS AVDGVANDWH LVHLGKFAQG GTGIVMVEAT
AVTANGRITH GDLGLWNDDQ IRPLERIAAF LRDNGAVPAI QLAHAGRKAS MQRPWYGNAA
LTAEDIARGD QPWEIVAPSP IPMDEGWLTP QELTDDDLDH LLEAWRSATL RAVEAGFEML
EVHCAHGYLL HSFLSPLSNK RTDAYGADRA GRMRFPLEVI ETVRAAWPDT LPLAIRVSSV
DGVDGGIELA DSVVFAREAK ARGADIIDCS SGGLLGSATA NRIPRGYGFQ VPFAEAIRTE
AEIPTIAVGL IIHPDQAEKI VEQGQADLIA IGREALFDPN WALHAQLELT EGDEVFADWP
KQYGWWLERR ESGLRKLDGP KLPFRRS
|
|---|
| |