Gene Rpal_5144 details

Gene Information

• Locus tag: Rpal_5144
• ID: 6412844
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 5538619
• End bp: 5540679
• Gene Length: 2061 bp
• Protein Length: 686 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642715034
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_001994107
• Protein GI: 192293502
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGACGGGG TATATCAAGT GAGTGTAACG ACAGCCGCCG GAGCGCGGGA TAAGTCCGCG 
GCGCTACCGG CTCTGCGTTT TCGTGGCAAG GTCACGCTCG GCTTTGCGGT GGTGCTCGGC 
ATCACGGCGA TCAGTATGGG GCTGGCGTAC CTCGGGTTCG AACGAGTTTC GGACGGGGTG 
GTCGCGTATC GCGACGGCGT CCGGCAGTCC GACCTCGCCC GCAATATCGA TCGCGAGATG 
GTCGGCTACG AGGCGCGGGC GCGTTATTAC GTACTCACCG GCAAGGACGA GGACGCCAAG 
GCAGCGCTCG CGGCCGAAGC CAGGCTCAAG GACGCGATCG CCGAGTCGCT ACAGGGCGCC 
ACCAGACCGG CGCAGCGTGA GGCGCTGACC CGGCTGTCGG GCGAGTTCTC CACCTTCGCC 
AAGCTGTTCG CCGACATCGT GGCGCTGAAG ACCGATAGCG CGCTCGTCGT TCAGAACGGG 
TTGACGCGCG GCGGCCTCAA CCTTCGTTAC AAGTTCGACG ATCTGGTGAG CGCCGCCAGC 
GACCGCGAAG ATTCGAGCGC CGAACTCGGC GCCAAGCGGG CGGCGGAACA ATATGCCGGC 
GCGATGACGC TGGCGAACAC GTTCGCGATC AACTCCAGCG TTCCGGTCGC CGACAACGCT 
TTGGCGCGGC TGAAATTCGT GGAGAATTCG CTGAACATCG TCAAGGCGGA CGGCGAGATC 
GCTGCGGCGG TGAACGAGAT CTTCACCATG CTGGGCGAGT ACCGGCAGGC GCTGGTCAAG 
CTCAGTGACA ACGTCAAGGC GATCGACGCC AAGGTCGCTA CCATGATGGG CTCCGCCGCC 
GCGATCATCC GCGACTCCGA AGCGATCAAG GCGGATCTGC TTGCCGATCA GCAGCGGCTC 
GAGCGCGAAT CCGATGCCAC GGTCACATCC ACCGAACGGA TGGTGGCGAT GCTCGGGATC 
GGCGGCTTCC TGCTCGGCGC AGTGCTCGCA GTGCTGCTCG GTCGGGGGAT TTCACGCCCG 
ATGCAGTCGA TGTGCGCGGC GATGCGCCGG CTGGCCGGCG GCGATTTCAA CGTGGTACTG 
CCGGGGCTCG GCCGCCGCGA CGAGATCGGC GAGATGGCCG CCGCGGTCGA GGAGTTCAAA 
GTCCAGGCTG CCCGCAAGGC CGAGCAGGAC GCGATCGCGC GCGAGCGCGA GGCGGAGGCC 
GGCCGCGAGG CCCGGCGCGC CGAGTTGATC GGCTTTGCCA GCGAATTCGA AAGCGCAGTC 
GGCGCGATCG TGGCGCATGT CTCCGACGCC GCGTCGCAGC TCGAAAGTGC CGCCTCGACG 
CTGACCCGCA CCGCCGAGAC CACACAGGCG CTGTCGGGGC AGGTTGCCGG CGATTCCCAG 
CAGGCGTCGT CCGGCATGCA GGCGGTCGCC TCCGCCACCG AGCAGCTTTC GGCCTCGGTC 
GGCGAGATCG GCCGCCGGGT CGACCAGTCC AGCGCCATCG CCGAAGCCGC GGTGGAGCAG 
GCCCACGAAA CCGACGACCG GATCGGCAAG CTGACCCAGG CGGCGCAGCA GATCGGCGAG 
GTGATGCAGC TCATCACCAC GATCGCCGAG CAGACCAACC TGTTGGCGCT CAATGCCACC 
ATCGAGGCGG CGCGGGCCGG CGAGGCCGGG CGAGGCTTCG CGGTGGTCGC CGCCGAGGTG 
AAATCATTGG CAACCCAAAC CGCGAAGGCG ACCGACGAAA TCTCCTCGCA GGTCGCCGAG 
ATGCAGGAAG CGACCCGGGA CTCGGTGACG TCGATTCAGC GGATCGGCAG CACCATTGCG 
GAGATCTCGA CGATCTCCGC CTCGATCGCC AGCGCTGTCA CGCAGCAGGA CGCCGCGACG 
CGTGAGATCG CCAGCAGCGT GCAGGGCGTC GCCCAGGGAA CTCAGCGGGT CGCGGGCAAC 
ATCGCCGAGG TCAACCGCGG GGCCGCCGAG ACCGGCGCCG CATCGGCTCA GGTGCTGCAG 
TCGGCCCGCA GCCTGTCGGC CGAGAGTGCG CGGCTGCGCA CCGAGCTCGA TCGTTTCATG 
GCCAATATCC GCGCCGCCTG A 

 

Protein sequence

MDGVYQVSVT TAAGARDKSA ALPALRFRGK VTLGFAVVLG ITAISMGLAY LGFERVSDGV 
VAYRDGVRQS DLARNIDREM VGYEARARYY VLTGKDEDAK AALAAEARLK DAIAESLQGA 
TRPAQREALT RLSGEFSTFA KLFADIVALK TDSALVVQNG LTRGGLNLRY KFDDLVSAAS 
DREDSSAELG AKRAAEQYAG AMTLANTFAI NSSVPVADNA LARLKFVENS LNIVKADGEI 
AAAVNEIFTM LGEYRQALVK LSDNVKAIDA KVATMMGSAA AIIRDSEAIK ADLLADQQRL 
ERESDATVTS TERMVAMLGI GGFLLGAVLA VLLGRGISRP MQSMCAAMRR LAGGDFNVVL 
PGLGRRDEIG EMAAAVEEFK VQAARKAEQD AIAREREAEA GREARRAELI GFASEFESAV 
GAIVAHVSDA ASQLESAAST LTRTAETTQA LSGQVAGDSQ QASSGMQAVA SATEQLSASV 
GEIGRRVDQS SAIAEAAVEQ AHETDDRIGK LTQAAQQIGE VMQLITTIAE QTNLLALNAT 
IEAARAGEAG RGFAVVAAEV KSLATQTAKA TDEISSQVAE MQEATRDSVT SIQRIGSTIA 
EISTISASIA SAVTQQDAAT REIASSVQGV AQGTQRVAGN IAEVNRGAAE TGAASAQVLQ 
SARSLSAESA RLRTELDRFM ANIRAA