Gene Rpal_5082 details

Gene Information

• Locus tag: Rpal_5082
• ID: 6412776
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 5469129
• End bp: 5469716
• Gene Length: 588 bp
• Protein Length: 195 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642714967
• Product: 3-dehydroquinate dehydratase
• Protein accession: YP_001994046
• Protein GI: 192293441

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACTTTT CTCACGGCAA GTCGGGACGA CCGTCGATCC TCGCAATCGT GTACACCGAT 
GGCGCAGCCG CCTGCGGGCT GATGTCGGAT CTCGGCCGCC GCTTGCGCGA CGCCGGCGTG 
GTGGTCGCGG GTCTGGTGCC GTATCAGGGC GCGGTCGACG ACGGCAACCC GCGCTGCGAT 
ATGGAAGTCG AGGAGCTGTC CTCCCACTTC ATCCTTCAGC TGGCGGAAGA GCGCGGCAAG 
CAGCCCCACG GCTGCCGCGT CGATCCGGAA GCCGTGCAGG AAGCCGCCGC TTTAATCGCG 
GCGTCGTTCC GCAACGCGCC CGAACTGCTG ATCGTCAATA AATTCGGTAA GCTCGAAGCC 
GATGGCGGCG GCCTCAGCGA CGTCATCAGC GACGCCGTGG ATCAGGGGAT TCCGGTCATC 
GTCGGCGTTC CTGAGCGACA TCTGGCAACG TGGCGCTGCT TTACCAGCGG CCTGGCCGAA 
GAAGCGTCGC TCGACTCGCC CCGTATTCAG CAATGGCTGG CCCGCCGCGG CTTCGGCCTC 
CGGCGCAACA CCGTCGGCCC GCAGCACGTG CTCAACTCGG CGGCGTAA 

 

Protein sequence

MDFSHGKSGR PSILAIVYTD GAAACGLMSD LGRRLRDAGV VVAGLVPYQG AVDDGNPRCD 
MEVEELSSHF ILQLAEERGK QPHGCRVDPE AVQEAAALIA ASFRNAPELL IVNKFGKLEA 
DGGGLSDVIS DAVDQGIPVI VGVPERHLAT WRCFTSGLAE EASLDSPRIQ QWLARRGFGL 
RRNTVGPQHV LNSAA