Gene Rpal_5065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5065 
Symbol 
ID6412759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5449446 
End bp5451602 
Gene Length2157 bp 
Protein Length718 aa 
Translation table11 
GC content65% 
IMG OID642714950 
Productlipopolysaccharide biosynthesis protein 
Protein accessionYP_001994029 
Protein GI192293424 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGGTA GCCAACCAGG CCGGGACAAG GCGATCCCTG CCCCGCGTCC GACCGCGGAC 
ATCTGGGAGA ACCCTGATCA GCTTCCGGCG GACCGCGGCG ATCTGATCAA GGCGAAGCTG
ACGCCTGCCG TTATCACCAA ATTCCTGCGG GACAATCTGA AACGGATCGC TCTGCTTGCC
AGTGCTCTGT TCGTGCTTGG CATGATCGTG CTGTGGTTGC TGCCGGTTCG TTATGCGGCC
ACCGCACTGG TGATGGTCGA TCCGCGCGAG CAGCGCGTCA CGACCGATCA GGAAGTGCTG
CCGGGCATCG GCCAGGACGC CGCCGCGCTG CAGAGCCTGA TCGAAATCGC CAAGTCGGAC
GGCTTCCTTA GGCCGCTGGT CGAGAAGCTG AAGGTCGCCG AGGACCACGA GATCGCCGGC
AGTGAGACCG ATCCGGCGCG CGTCCTGGAC CGTTTCCGCA AGCATCTGGA GATCGCGCGG
CGCGGCCTGA CTTACGTGAT CGAAATGACC TTCTTGGCGA AGGACCCGCA GCGCGCGGCG
TATTACGCCA ACGCGGTCGC AGAGGCGTTC GTCGCCAGTC AGACCCAGGT GCGTGCCGTG
GCGGCCGACG AGGCCGCCGG CTGGCTGAGC AGCCGCCTGA AGACGCTGAA CGAAAAGCTG
CGGGCGTCGG AAGATGCGGT GGCGGCGTTC AAGACCCAGT ACCGCATCGT CGATGCCGGG
CGTGAGAGTA CCACCCTGCA GCTTCGGGTC ACCGAGCTGA CCCAGCAAGT GTCCGCAGCC
CGACTGCGCA CCGAGGAAGC GAAGAACCGC TACGAACAGG CGCAGCGCGA CCTGAAGTCC
GACGTCGACG GCTCGACCGG CTCGAAGTCC GATCTCGTCA GCGTTCTGCG TACCCAGCGT
ACCCAGCTCA ACGATCAGAT TGCCCAAAAG CGCGCGGTGC TGGGCGATCG GCATCCAGAG
CTTGTGATCG CCTATAATCA GCTCGCCGAA CTCAATCGCC AGATCGAAGC CGAGCGCAAG
CGCAACATCG TCAGCGCCAA ATCCGACTAC GATGCGATGC GCGACCAGTT GAAGACGCTG
GAGCAGCAGC TGAAGTCGCT CGAGACCGAG ATGCTCGGCG ACGATCAGGC CGCGGTGAAG
CTCAAGGAGC TGCAGCGCGA GGCCAACGCC AATCGCGCGA TCTACGAGCA GTTCCTGGAG
CGTTACAACA CCACCAACCA ACAGCGTCTG CTGCAGGCGA CCCAGACCAA AGTGGCGTCG
TTTGCAACCC CGCCGACCCG GCCGACCCGG CCGCCGCTGC TGGTGCTGAT CGCCGCCATC
GCGGTGGCGT CGATCCTGGT GTCGATCGCC GTCGTTGCCA TGCTGGCGTC GCTGTCGAAC
CAACCGGAGC AGGCCGACAA TTCCGGTCCG CCGGAAGGTG CAACCGCACC CGTGCCGGTT
GAAGCTGCAG CGACCTCGGC TGCGGAGCCG ATCGAGGAGA AGAAGCCCGC CGCCGACTAT
TCCAATCTGC CGATCGTCGC GCGGATTCCC GATCTGTCCG GCGTGCGCAC CCTCGGTGGC
AAGCTGGCGA TGCTCGGTGG CGAGCGGCGG CTCGATCACT ATGTCGTCGG GTTGCTCGAT
GCGATCGGGG TGAAGCCGTC GCAGCGCGGC AAGGTCGTGC TTGTGACGTC AGTCGATCCT
GGCGCCGGCA AGAGCTCGGT GGCGCGTGCG TTGAACGCGA TCGCGGTCGA TCGTGGGATG
CTGAGTGTCG TCATTGAAGT CGCGGGTCAG GCGCGCACCG CGCCTGCTGC GCCGTCGAAC
CGCGCCGAGC CGGATGGTGG CGCTCTGGTC CGCGTGTTGA AAACCACGAT TCCGTCCGTC
GTCCGTCTGA TCGCATCGGC ACCCGATGTG TCGGCGCAGA ACGATGTCCG CAGCGAGTTC
GATCTCATCC TGATCGACGC GCCGGCGCTT GCCACGCAGA CGGAGGTTGC CGAGATCGCT
GCTCACACCG ATCTCAATCT GCTGGTGATC GACAGCGCCG TCACCGAGGC TGGCGCCGCG
TTGGAAGCGC AGGCGCTGCT GTCGCGCCGT GGACATGCGC CCGCTGGCGT AGTCGTCAAC
AAGGCCAGTG CGCAGCCGGC TCCTGCTGCG GTTCCCGCCG CACGGCTGGC GAGCTGA
 
Protein sequence
MSGSQPGRDK AIPAPRPTAD IWENPDQLPA DRGDLIKAKL TPAVITKFLR DNLKRIALLA 
SALFVLGMIV LWLLPVRYAA TALVMVDPRE QRVTTDQEVL PGIGQDAAAL QSLIEIAKSD
GFLRPLVEKL KVAEDHEIAG SETDPARVLD RFRKHLEIAR RGLTYVIEMT FLAKDPQRAA
YYANAVAEAF VASQTQVRAV AADEAAGWLS SRLKTLNEKL RASEDAVAAF KTQYRIVDAG
RESTTLQLRV TELTQQVSAA RLRTEEAKNR YEQAQRDLKS DVDGSTGSKS DLVSVLRTQR
TQLNDQIAQK RAVLGDRHPE LVIAYNQLAE LNRQIEAERK RNIVSAKSDY DAMRDQLKTL
EQQLKSLETE MLGDDQAAVK LKELQREANA NRAIYEQFLE RYNTTNQQRL LQATQTKVAS
FATPPTRPTR PPLLVLIAAI AVASILVSIA VVAMLASLSN QPEQADNSGP PEGATAPVPV
EAAATSAAEP IEEKKPAADY SNLPIVARIP DLSGVRTLGG KLAMLGGERR LDHYVVGLLD
AIGVKPSQRG KVVLVTSVDP GAGKSSVARA LNAIAVDRGM LSVVIEVAGQ ARTAPAAPSN
RAEPDGGALV RVLKTTIPSV VRLIASAPDV SAQNDVRSEF DLILIDAPAL ATQTEVAEIA
AHTDLNLLVI DSAVTEAGAA LEAQALLSRR GHAPAGVVVN KASAQPAPAA VPAARLAS