Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5065 |
Symbol | |
ID | 6412759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5449446 |
End bp | 5451602 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642714950 |
Product | lipopolysaccharide biosynthesis protein |
Protein accession | YP_001994029 |
Protein GI | 192293424 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGGTA GCCAACCAGG CCGGGACAAG GCGATCCCTG CCCCGCGTCC GACCGCGGAC ATCTGGGAGA ACCCTGATCA GCTTCCGGCG GACCGCGGCG ATCTGATCAA GGCGAAGCTG ACGCCTGCCG TTATCACCAA ATTCCTGCGG GACAATCTGA AACGGATCGC TCTGCTTGCC AGTGCTCTGT TCGTGCTTGG CATGATCGTG CTGTGGTTGC TGCCGGTTCG TTATGCGGCC ACCGCACTGG TGATGGTCGA TCCGCGCGAG CAGCGCGTCA CGACCGATCA GGAAGTGCTG CCGGGCATCG GCCAGGACGC CGCCGCGCTG CAGAGCCTGA TCGAAATCGC CAAGTCGGAC GGCTTCCTTA GGCCGCTGGT CGAGAAGCTG AAGGTCGCCG AGGACCACGA GATCGCCGGC AGTGAGACCG ATCCGGCGCG CGTCCTGGAC CGTTTCCGCA AGCATCTGGA GATCGCGCGG CGCGGCCTGA CTTACGTGAT CGAAATGACC TTCTTGGCGA AGGACCCGCA GCGCGCGGCG TATTACGCCA ACGCGGTCGC AGAGGCGTTC GTCGCCAGTC AGACCCAGGT GCGTGCCGTG GCGGCCGACG AGGCCGCCGG CTGGCTGAGC AGCCGCCTGA AGACGCTGAA CGAAAAGCTG CGGGCGTCGG AAGATGCGGT GGCGGCGTTC AAGACCCAGT ACCGCATCGT CGATGCCGGG CGTGAGAGTA CCACCCTGCA GCTTCGGGTC ACCGAGCTGA CCCAGCAAGT GTCCGCAGCC CGACTGCGCA CCGAGGAAGC GAAGAACCGC TACGAACAGG CGCAGCGCGA CCTGAAGTCC GACGTCGACG GCTCGACCGG CTCGAAGTCC GATCTCGTCA GCGTTCTGCG TACCCAGCGT ACCCAGCTCA ACGATCAGAT TGCCCAAAAG CGCGCGGTGC TGGGCGATCG GCATCCAGAG CTTGTGATCG CCTATAATCA GCTCGCCGAA CTCAATCGCC AGATCGAAGC CGAGCGCAAG CGCAACATCG TCAGCGCCAA ATCCGACTAC GATGCGATGC GCGACCAGTT GAAGACGCTG GAGCAGCAGC TGAAGTCGCT CGAGACCGAG ATGCTCGGCG ACGATCAGGC CGCGGTGAAG CTCAAGGAGC TGCAGCGCGA GGCCAACGCC AATCGCGCGA TCTACGAGCA GTTCCTGGAG CGTTACAACA CCACCAACCA ACAGCGTCTG CTGCAGGCGA CCCAGACCAA AGTGGCGTCG TTTGCAACCC CGCCGACCCG GCCGACCCGG CCGCCGCTGC TGGTGCTGAT CGCCGCCATC GCGGTGGCGT CGATCCTGGT GTCGATCGCC GTCGTTGCCA TGCTGGCGTC GCTGTCGAAC CAACCGGAGC AGGCCGACAA TTCCGGTCCG CCGGAAGGTG CAACCGCACC CGTGCCGGTT GAAGCTGCAG CGACCTCGGC TGCGGAGCCG ATCGAGGAGA AGAAGCCCGC CGCCGACTAT TCCAATCTGC CGATCGTCGC GCGGATTCCC GATCTGTCCG GCGTGCGCAC CCTCGGTGGC AAGCTGGCGA TGCTCGGTGG CGAGCGGCGG CTCGATCACT ATGTCGTCGG GTTGCTCGAT GCGATCGGGG TGAAGCCGTC GCAGCGCGGC AAGGTCGTGC TTGTGACGTC AGTCGATCCT GGCGCCGGCA AGAGCTCGGT GGCGCGTGCG TTGAACGCGA TCGCGGTCGA TCGTGGGATG CTGAGTGTCG TCATTGAAGT CGCGGGTCAG GCGCGCACCG CGCCTGCTGC GCCGTCGAAC CGCGCCGAGC CGGATGGTGG CGCTCTGGTC CGCGTGTTGA AAACCACGAT TCCGTCCGTC GTCCGTCTGA TCGCATCGGC ACCCGATGTG TCGGCGCAGA ACGATGTCCG CAGCGAGTTC GATCTCATCC TGATCGACGC GCCGGCGCTT GCCACGCAGA CGGAGGTTGC CGAGATCGCT GCTCACACCG ATCTCAATCT GCTGGTGATC GACAGCGCCG TCACCGAGGC TGGCGCCGCG TTGGAAGCGC AGGCGCTGCT GTCGCGCCGT GGACATGCGC CCGCTGGCGT AGTCGTCAAC AAGGCCAGTG CGCAGCCGGC TCCTGCTGCG GTTCCCGCCG CACGGCTGGC GAGCTGA
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Protein sequence | MSGSQPGRDK AIPAPRPTAD IWENPDQLPA DRGDLIKAKL TPAVITKFLR DNLKRIALLA SALFVLGMIV LWLLPVRYAA TALVMVDPRE QRVTTDQEVL PGIGQDAAAL QSLIEIAKSD GFLRPLVEKL KVAEDHEIAG SETDPARVLD RFRKHLEIAR RGLTYVIEMT FLAKDPQRAA YYANAVAEAF VASQTQVRAV AADEAAGWLS SRLKTLNEKL RASEDAVAAF KTQYRIVDAG RESTTLQLRV TELTQQVSAA RLRTEEAKNR YEQAQRDLKS DVDGSTGSKS DLVSVLRTQR TQLNDQIAQK RAVLGDRHPE LVIAYNQLAE LNRQIEAERK RNIVSAKSDY DAMRDQLKTL EQQLKSLETE MLGDDQAAVK LKELQREANA NRAIYEQFLE RYNTTNQQRL LQATQTKVAS FATPPTRPTR PPLLVLIAAI AVASILVSIA VVAMLASLSN QPEQADNSGP PEGATAPVPV EAAATSAAEP IEEKKPAADY SNLPIVARIP DLSGVRTLGG KLAMLGGERR LDHYVVGLLD AIGVKPSQRG KVVLVTSVDP GAGKSSVARA LNAIAVDRGM LSVVIEVAGQ ARTAPAAPSN RAEPDGGALV RVLKTTIPSV VRLIASAPDV SAQNDVRSEF DLILIDAPAL ATQTEVAEIA AHTDLNLLVI DSAVTEAGAA LEAQALLSRR GHAPAGVVVN KASAQPAPAA VPAARLAS
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