| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4904 |
|---|
| Symbol | |
|---|
| ID | 6412590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5272912 |
|---|
| End bp | 5275533 |
|---|
| Gene Length | 2622 bp |
|---|
| Protein Length | 873 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642714781 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001993868 |
|---|
| Protein GI | 192293263 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.683005 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGCC TGTGGCAATC GATGACAACG GCCTGGATGT CCCGAACCGA TCGGTCGGCT
CTGCTCGACT TCTGGCTCGG CGGCCGCGGC GCCGGCACGC TGATCGCGAA CACCGATATC
GACGAGCAGG AAATGCGGCG GATCCGCGCC GCGCAGATCA ACAGCGTCAC CCGGCTGACG
CCGGTGACGA TGAGTATCAA CGTCGCCAAC GCTGCGCTGA TCCTGTTCAC CTTCTGGGAC
AACGACGCCC GCCCGCAACT GCTGGCGTGG ACGGCGATGA TCGTGTTCGC GGCGGGATCG
GCGGTTCAGT CGTGGCTGCG CAACCGCTTC GAGCCCCGGC TCGAGGCCTC CGCCCATGCG
ATCCGGCGGA TGACGCTGCA CGCGTTGCTG CTCGGATTGA TCTGGGGCGC GATGCCCGTG
ATGGTGTTCG TCAAGGCCGA TCCGGGTGAT CAGTTGATCG TCGCCTGCGT GGCGGCCGGC
ATGATCTCCG GCGGCGCGTT TACGCTGTCC ACGGTGCCAC GCGCCGGCCT CGCTTATACT
TGGTCACTGG CCGCTGGATC GGCGCTGTCG CTGGCGCTGT GCGATGGCAT GGCTTACCGC
ATCACCGCGG CCTTCCTGGT GCTGTACGCG GTGTTCATGT CGCGCAACCT GATCTCGCAC
GGCGAGATGT TCTTCGACAA TTTGCGGGCG AAGTTCGAAC TCGAACGGCA GACTGAAATC
ATCTCGCTGC TGCTGAAGGA TTTCCAGGCC AACGCCAGCG ACTGGCTGTG GCAGACCGAT
GCCCATGGCC GGCTGGTGCA TGTGCCGGAG CGCTTCGTCG AAGTCGCCAA GCTGCCGCCG
TCGCTGCTGA TCGGGGCGCC GCTCGCGGAC GTGATCGGCA TGCTGTGCCC GGAGGACGGC
CGCTGCGCCA TGGGTGTCGC TGCGAAGATG GCGCAGCGCG AGCCGATGAA CGATCTCGTG
GTGCATGTGG TGATCGGCGG CACGCCGCGT CTGTGGTCGC TCACCGCCAA GCCGATGTTC
GATGCCGCCG GCGAGTTCGC AGGCTATCGC GGCGTCGGCC GTGACGTCAC CGAGCGCTGG
CGCGCCGAGC AGGCCGAGGC CGAAAACCGC GCCAAGTCCA GCTTCCTGGC GATGATGAGT
CACGAGATCC GCACGCCGAT GAACGGTGTG CTGGGCCTCG CCAACTCACT GCTCGAAACC
AAGCTCGATC CCGAGCAGCA ACAGGCCGTC ACCACGATCC GCGATTCCGG TGACGACCTG
CTGCGCATCC TCAACGATAT CCTCGATCTG TCGAAACTCG AGGCCGGCCG GCTGGAGTTC
GAGCAGGCCG ACTTCTCGCC CACCACCCTG GTCGAGTCGG TCCGCGCGAT TATCGAGCCG
GAAGTTCGAG GCAAGGGCAT CGAACTGAAG GTCGATATCG ATCCGCGGCT ACCGCCATCG
TTGAACGGTG ACGCGGCACG AATCCGCCAG GTGCTGCTCA ACCTCGCTGC GAACGCGGTG
AAGTTCACCG AGCAAGGCTC GATTGCCATC GTGCTGACGT GCGTAAAGCG CAACGACAGC
CACGCCACCG TCGAGTGGCA GGTGACCGAT ACCGGCATCG GCATTTCGCC GGATCGTGTC
GGCAGCCTGT TCACCGACTT TGCCCAGGCC GATGTCTCGA TCAATCGCCG GTTCGGCGGC
ACCGGGCTTG GGCTCGCGAT CAGCCGGCGG ATCGTCGAAC AGATGGGCGG CGATATCGCC
GTCACCTCCC GCGAAGGCGA GGGCTCGACC TTCCGCTTCA GCCTCGACCT GCCGTGGAGC
AATGCCTGGA TTGCCGACCA CCGGCTCGAC CGGCTCGGCA GCGACGATCT CCGCACCCGC
ATCGCGATGT TGGGACGGCC GCTACGCGTG CTGATCGCCG AAGACGACTC CACCAACCAG
ATGGTGGTGA TGAAGATGCT GCAGGAATTC GCCGCCGAAA TCACCGTGGT GTCCGACGGC
ACCGACGCGG TGCAGGCGGC AGGTGAGGGC GAGTTCGACG TCGTACTGAT GGACGTGCGG
ATGCCCAACA TGGACGGCCT CGCCGCCACC CGGGCGATCC GCGGCAAGGG TGGCGCGCTC
GCCAAACTGC CGATTATCGC GCTCACCGCG AACGCTTTCC CCGACGACGT CAAAGTTTGC
CGCGACGCCG GCATGAATGA CTTCCTGGCA AAGCCGCTGC GCAAGCCGGC GCTGGTTGCG
GCCGTGCTGC GGGCGCTGCG CGGCGCATCG ACACCGGTGA CGATGCCGTC GCCGCCGATG
CTGGTCGATC TCGACACGCT CGCCGAACTC ACCGCCGAGA TCGGCCAGGA TCAGGTGAAC
GAGATGGTGG CGCTGTTCTT CGCCGAAACC GAGCGGCGGA TCGCGCTGTT CCGGCGCTTT
GCCGAACACA TGGACCGCCA CGACCTTGAG GTCGAGGCGC ATTCGCTCAA GGGCGGGGCC
CGCACACTCG GCTTCCACCC GATCGCCGAG ATCGCACGTT CGATCGAGCG CGAAGCGGGA
TCGATCTCGC CCGAGGCGCT CGATCTGTTC ACCGGTCAGC TCAACAAGGC GCTGATCGAG
CTGCGCCGGC AATGCGAAGG CAGCCTGAAG CTGGCGAGCT GA
|
|---|
| Protein sequence | MSGLWQSMTT AWMSRTDRSA LLDFWLGGRG AGTLIANTDI DEQEMRRIRA AQINSVTRLT
PVTMSINVAN AALILFTFWD NDARPQLLAW TAMIVFAAGS AVQSWLRNRF EPRLEASAHA
IRRMTLHALL LGLIWGAMPV MVFVKADPGD QLIVACVAAG MISGGAFTLS TVPRAGLAYT
WSLAAGSALS LALCDGMAYR ITAAFLVLYA VFMSRNLISH GEMFFDNLRA KFELERQTEI
ISLLLKDFQA NASDWLWQTD AHGRLVHVPE RFVEVAKLPP SLLIGAPLAD VIGMLCPEDG
RCAMGVAAKM AQREPMNDLV VHVVIGGTPR LWSLTAKPMF DAAGEFAGYR GVGRDVTERW
RAEQAEAENR AKSSFLAMMS HEIRTPMNGV LGLANSLLET KLDPEQQQAV TTIRDSGDDL
LRILNDILDL SKLEAGRLEF EQADFSPTTL VESVRAIIEP EVRGKGIELK VDIDPRLPPS
LNGDAARIRQ VLLNLAANAV KFTEQGSIAI VLTCVKRNDS HATVEWQVTD TGIGISPDRV
GSLFTDFAQA DVSINRRFGG TGLGLAISRR IVEQMGGDIA VTSREGEGST FRFSLDLPWS
NAWIADHRLD RLGSDDLRTR IAMLGRPLRV LIAEDDSTNQ MVVMKMLQEF AAEITVVSDG
TDAVQAAGEG EFDVVLMDVR MPNMDGLAAT RAIRGKGGAL AKLPIIALTA NAFPDDVKVC
RDAGMNDFLA KPLRKPALVA AVLRALRGAS TPVTMPSPPM LVDLDTLAEL TAEIGQDQVN
EMVALFFAET ERRIALFRRF AEHMDRHDLE VEAHSLKGGA RTLGFHPIAE IARSIEREAG
SISPEALDLF TGQLNKALIE LRRQCEGSLK LAS
|
|---|
| |