Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4894 |
Symbol | |
ID | 6412580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5261255 |
End bp | 5262334 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642714771 |
Product | ABC transporter related |
Protein accession | YP_001993858 |
Protein GI | 192293253 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.332035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGTCA GCCTGGAGAA TGTCACCAGG GTGCTGGACG GCGTTCCGGC GATCCGCAAC GTATCGCTGA CGCTGGAACG CGGTACGCTC AGCGTGCTGC TCGGACCAAC CCTGTCGGGC AAGACCTCGA TCATGCGGCT GCTCGCCGGC CTCGACAAGC CGACCACCGG TCGTGTGCTG GTCGACGGCA AGGACGTCAC CGGCGCCGAT GTACGCACCC GCTCGGTGGC GATGGTGTAT CAGCAGTTCA TCAACTACCC GTCGCTGACC GTGTACGAGA ACATCGCCTC GCCGCTGCGC GTGCAGCGCA AGTCGCGCGC CGAGATCGAG CAGCGCGTCC AGGAGGCAGC CAAGCTGCTC AAGCTCGAGC CGTATCTGCA GCGCACGCCG CTGCAGCTTT CCGGCGGCCA GCAGCAGCGC ACCGCGATCG CCCGCGCGCT GGTCAAGGGT GCCGATCTGG TGTTGCTCGA CGAGCCGCTC GCCAACCTCG ACTACAAACT GCGCGAGGAA CTGCGCACCG AGCTGCCGAA GATCTTCGAG GCCTCCGGCG CGATCTTCGT TTACGCCACC ACCGAGCCTT CCGAAGCGCT GCTGCTCGGC GGCCGCACCA TCTGCATGTG GGAAGGTCAG GCGCTACAGG TCGGGCCGAC CCCGCAGGTG TATCGCAAGC CCGACACCAT GCGGGTGGCG CAGGTGTTCT CCGATCCGCC GCTCAACATC GTCGGCGCCG AGAAGAAGGC CGGCACCGTG CATTACTCCG GCGGCGTCAC CGCGCCCGCG ACTGGTGTAT TCGCGAGCCT TTCCGATGGC GCCTATCGCG TCGGCTTCCG TGCGCATCAG ATCGAGGTGA AGAGCGCCGA TCCGGATCGC CACGCGTTCC GAGCCACCGT CGCGGTGACC GAGATCACCG GCTCTGAGAG CTTCGTGCAT CTGAAGCGCG GCGACGATTA CTGGGTCGCG GTGCTGCACG GCATCCACGA GTTCGAGCCG GGCCAGACGC TCGACGCCAT CCTCGACCCC GCCAATCTGT TCGTGTTCGA CGCGGCTGAT CGCCTCGTCG CCGCGCCGAA GCCGATCTGA
|
Protein sequence | MSVSLENVTR VLDGVPAIRN VSLTLERGTL SVLLGPTLSG KTSIMRLLAG LDKPTTGRVL VDGKDVTGAD VRTRSVAMVY QQFINYPSLT VYENIASPLR VQRKSRAEIE QRVQEAAKLL KLEPYLQRTP LQLSGGQQQR TAIARALVKG ADLVLLDEPL ANLDYKLREE LRTELPKIFE ASGAIFVYAT TEPSEALLLG GRTICMWEGQ ALQVGPTPQV YRKPDTMRVA QVFSDPPLNI VGAEKKAGTV HYSGGVTAPA TGVFASLSDG AYRVGFRAHQ IEVKSADPDR HAFRATVAVT EITGSESFVH LKRGDDYWVA VLHGIHEFEP GQTLDAILDP ANLFVFDAAD RLVAAPKPI
|
| |