Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4789 |
Symbol | |
ID | 6412475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5155065 |
End bp | 5156654 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642714667 |
Product | D-3-phosphoglycerate dehydrogenase |
Protein accession | YP_001993754 |
Protein GI | 192293149 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGCTC CCAAAGTCCT CATTTCCGAC GCGCTGTCGG AAGCCGCCGT CCAGATCTTC AAGGATCGCG GCATCGACGT TGATTTCCAG CCGAACCTCG GCAAGGACAA AGACAAGCTC GCCGAGATCA TTGGCAATTA CGACGGCCTC GCGATCCGCT CCGCCACCAA GGCGACGGCG AAGATCCTGG AGAAGGCCAA CCGTCTCAAG GTGATCGGCC GCGCCGGCAT CGGCGTCGAC AACGTCGAGA TTCCCGCGGC GACCGCCAAG GGCATCATCG TGATGAACAC CCCGTTCGGC AATTCGATCA CCACCGCCGA GCACGCCATC ACCATGATGC TGTCGCTGGC CCGCGAGATC CCTGCCGCCG ACGCCTCGAC CCAGGCCGGC AAGTGGGAAA AGAACCGCTT CATGGGCGTC GAAATCACCG CCAAGACCCT CGGCGTGATC GGCTGCGGCA ACATCGGCTC GATCGTCGCC GACCGCGCGC TCGGCCTGAA GATGAAGGTG ATCGCGTTCG ATCCGTTCCT GTCGCCGGAG CGCGCCAAGG ATCTGGGCGT CGAGAAGGTC GAGCTCGAAG ACATCTTCAA GCGCGCCGAC TTCATCACCC TGCACACCCC GCTCACCGAC AAGACCAAGA ACATCATCGA CGCGGCCGCC ATCGCCAAGA TGAAGAAGGG CGTCCGCATC ATCAATTGCG CCCGCGGCGG TCTGGTCGAC GAGAACGCCC TCGCCGAAGC GCTGAAGTCC GGCCACGTCG CCGGCGCGGC GTTCGACGTG TTCTCGGAAG AGCCGGCCAC CAAGAACGTG CTGTTCGGCC TGCCGAACGT GATCTGCACC CCGCATCTCG GCGCCTCGAC GACTGAAGCG CAGGAGAACG TCGCGCTGCA GGTCGCCGAG CAGATGAGCG ACTACCTGCT GACCGGCGCG ATCACCAACG CGATCAACTT CCCGTCGATC ACCGCCGAAG AAGCCCCGAA GCTGAAGCCG TTCATCGAAC TGGCCGAAAA GCTCGGCTCG TTCGCCGGCC AGCTCACCGA GACCGGCATC ACCAAGGTCA CCATCACCTA TGAGGGTGAA GTGGCCGAGA TGAAGATCAA GGCGCTGACC TCGGCGGTGC TGTCGGGCCT GCTGCGGCCG ATGCTGGGCG ACATCAATGT CGTGTCGGCG CCGGTGATCG CCAAGGAGCG CGGCATGGTG GTGGATGAAG TCGTCCGCGC CGCCGAGAGC GACTACGAGA GCCTGATCAC CCTGACGGTG ACCACCGAGA AGCAGGAGCG CTCTGTGTCC GGCACGGTCT ATGCCGACGG CAAGCCGCGC CTGGTCGACA TCAAGGGCAT CCGCGTCGAC GCCGAGTTCG GTTCTTCGAT GATCTACGTC ACCAACGAGG ACAAGCCGGG CTTCATCGGC AAGTTCGCCA GCCTGCTCGG CGACGCCAAG GTCAACATCG CGACCTTCAA CCTCGGCCGT CACACCGAAG GCGGCGACGC CATCGCGCTG GTGACGATCG ACGGTCCGGC CCCGACTGAG GTGCTGGAGA AGGTCCAGGC CCTGCCGCAG GTCAAGCAGG TCAAGGCGCT GACGTTCTGA
|
Protein sequence | MTAPKVLISD ALSEAAVQIF KDRGIDVDFQ PNLGKDKDKL AEIIGNYDGL AIRSATKATA KILEKANRLK VIGRAGIGVD NVEIPAATAK GIIVMNTPFG NSITTAEHAI TMMLSLAREI PAADASTQAG KWEKNRFMGV EITAKTLGVI GCGNIGSIVA DRALGLKMKV IAFDPFLSPE RAKDLGVEKV ELEDIFKRAD FITLHTPLTD KTKNIIDAAA IAKMKKGVRI INCARGGLVD ENALAEALKS GHVAGAAFDV FSEEPATKNV LFGLPNVICT PHLGASTTEA QENVALQVAE QMSDYLLTGA ITNAINFPSI TAEEAPKLKP FIELAEKLGS FAGQLTETGI TKVTITYEGE VAEMKIKALT SAVLSGLLRP MLGDINVVSA PVIAKERGMV VDEVVRAAES DYESLITLTV TTEKQERSVS GTVYADGKPR LVDIKGIRVD AEFGSSMIYV TNEDKPGFIG KFASLLGDAK VNIATFNLGR HTEGGDAIAL VTIDGPAPTE VLEKVQALPQ VKQVKALTF
|
| |