Gene Rpal_4746 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4746 
Symbol 
ID6412432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5111313 
End bp5113004 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content64% 
IMG OID642714625 
ProductLong-chain-fatty-acid--CoA ligase 
Protein accessionYP_001993712 
Protein GI192293107 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGCGGA TCTGGCTCAA GCAATACCCG CCGGGAGTCC CGGCCGACAT CGACGTGACG 
CAGTATCCCT CGCTGGTCGA CCTGTTCGAG GAAAGCTTCC GTAAGTACGG CGACCGCAAG
GCCTTCATCT GCATGGATAA GGCGATCACC TATCGCGAGC TCGACGAGAT GTCGGTCGCG
CTGGGCGCCT ACCTGCAGGG CAAGGGTCTT CAGAAGGGCG CGCGCGTCGC GCTGATGATG
CCGAACGTGC TGCAGTATCC GGTGGCGATC GCCGCGGTGT TGCGCGCCGG CTTCGCGGTC
GTCAACGTCA ACCCGCTCTA CACACCGCGC GAGCTCGAGC ACCAGCTTAA GGATTCCGGC
GCCGAAGCCA TCATCGTGCT GGAGAACTTC GCCCACACCG TCGAGCAGGT GATCGCCCGC
ACCCCGGTCA AGCACATCAT CGTCGGCGCG ATGGGTGACA TGCTCGGCTT CAAGGGCGTG
ATCGTCAATC TGGTGGTCCG CAAGGTGAAG AAGATGGTGC CGGCGTTTTC GCTTCCCGGC
GCGGTCTCGT TCAACGACGC GGTCTCGGCC GGCCGCGGCC AGAAGTTCAC CAAGCCGGCG
ATCGGTCCCG AGAGCGTCGC CTTCCTGCAA TACACCGGCG GCACGACCGG CGTCTCCAAG
GGCGCGACGC TGCTCCACCG CAACGTGGTG GCGAACGTGC TGCAGAACGA CGCCTGGCTG
CAGCCGGCGC TGGCCAAGCC GCCGCATGTC GACCAGCTGT TCATCGTCTG CGCGCTGCCG
CTGTACCACA TCTTCGCGCT GACCGCGTGC TACCTGCTCG GCATGCGCGC CGGCGGCGTC
AACCTGCTGA TCCCGAACCC GCGCGACATC CCGGGCTTCA TCAAGGAACT GATGAAGTAT
CAGGTCAACA GCTTCCCGGC CGTCAACACG CTGTACAACG GCCTGCTGCA TGCGCCGGGC
TTCGACAAGG TCGACTTCTC CAAGCTGAAG ATCTCCAACG GCGGCGGCAT GGCGGTGCAA
CGTCCGGTCG CCGAAGCCTG GCTGAAGATG ACCGGCTGCC CGATTGCCGA AGGCTACGGC
CTGTCCGAGA CCGCGCCGGT GCTGACCTGC AACCCGGCGA CCGTCAACGA GTTCAACGGC
ACCATCGGGC TTCCGATGCC GTCGACCGAG CTCTCGATCC GCGACGAAGA AGGCAAGGAA
GTGCCGTTCG GCACCGCGGG CGAGATCTGC GCCAAGGGTC CACAGGTGAT GTCGGGCTAC
TGGAATCGTC CCGACGAGAC CGCGCTGGTG ATGACAGCCG ACGGCTTCTT CCGCACCGGC
GATATCGGCG TGATGTCGCC GGACGGCTTC ACCAAGATCG TCGACCGCAA GAAAGATATG
ATCCTGGTCT CCGGCTTCAA CGTCTATCCG AACGAGGTCG AGGAAGTGGT CGCCAGCCAT
CCCGGCGTGC TGGAATGCGC GGTGATCGGC GTGCCGGACT CGCGCACCGG CGAAGCCGTC
AAGGCGTTCG TGGTGAAGAA GGACCCGGAT GTCACCGCCG AGGACATCAT CAAGTTCTGC
CACCACGAAC TGACCAACTA CAAAGTGCCG CGGCAGATCG AATTCCGCAC CACGCTGCCG
AAGACCAATG TCGGCAAGAT CCTGCGCCGC GAACTGCGCG ACGAGAAGAA GAGCAACCAG
GCGGCAGCGT AA
 
Protein sequence
MERIWLKQYP PGVPADIDVT QYPSLVDLFE ESFRKYGDRK AFICMDKAIT YRELDEMSVA 
LGAYLQGKGL QKGARVALMM PNVLQYPVAI AAVLRAGFAV VNVNPLYTPR ELEHQLKDSG
AEAIIVLENF AHTVEQVIAR TPVKHIIVGA MGDMLGFKGV IVNLVVRKVK KMVPAFSLPG
AVSFNDAVSA GRGQKFTKPA IGPESVAFLQ YTGGTTGVSK GATLLHRNVV ANVLQNDAWL
QPALAKPPHV DQLFIVCALP LYHIFALTAC YLLGMRAGGV NLLIPNPRDI PGFIKELMKY
QVNSFPAVNT LYNGLLHAPG FDKVDFSKLK ISNGGGMAVQ RPVAEAWLKM TGCPIAEGYG
LSETAPVLTC NPATVNEFNG TIGLPMPSTE LSIRDEEGKE VPFGTAGEIC AKGPQVMSGY
WNRPDETALV MTADGFFRTG DIGVMSPDGF TKIVDRKKDM ILVSGFNVYP NEVEEVVASH
PGVLECAVIG VPDSRTGEAV KAFVVKKDPD VTAEDIIKFC HHELTNYKVP RQIEFRTTLP
KTNVGKILRR ELRDEKKSNQ AAA