Gene Rpal_4480 details

Gene Information

• Locus tag: Rpal_4480
• ID: 6412164
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4816100
• End bp: 4822177
• Gene Length: 6078 bp
• Protein Length: 2025 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642714362
• Product: conserved hypothetical protein; putative methyl-accepting chemotaxis protein
• Protein accession: YP_001993451
• Protein GI: 192292846

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAACA ATCCTAAGAA GATCAAAGAT CCGACCGAAG TCGCGCTGTC GGCCATTCAG 
GAAGCCCTGA ATATCCCCGA TGCGCCTCCG GCCGGTGACG ATCAGGCCGC CGGGCCAAAG 
GAAAGTGTGC CAAATTCGGA CACCCCCGAG CCCAGCTTCT CCGAACTGAC GGAGCTGGCC 
GGGGAGCCGC GGATCACGCC GCCGGCGCCG AGCTTCGAGC CGGCCGCCGA GCGCAGCTTC 
GCCAGCCGCC CCGCCAACGA CGACCGCGAA ACCATCGGCC AGTTGCTGCA GTCGCTGCAG 
AAGGGCCGCA CCACCCGTAA CGTCTATACG CTCGCCACCA TTTTCGCCGG CGTCTGGGTG 
TTCGGCGGCA TCATTCTGAC CGTCAGCTTC CTGCCCGCCC TGCAGGCGCT GGTCGGCCAG 
GGCAGCGGCG GAACGCTGGC GCTCGCCGGT CTCGCGGCGC TGTTCTTCGC GCCGGTGATG 
CTGTTCTATT TCCTCGCCAG CCTCGCCTGG CGCGGCCAAG AATTGCGGAT GATTGCGCAG 
TCGATGGCGC AGGTAGCGAT CCGCTTTTCC GAGCCCGAAA TCGCCGCCAG CGACTCAGTG 
GTGACCGTCG GTCAGGCGAT CCGCCGCGAG GTCGCCGCGA TGGGCGACGG CGTCGAGCGC 
GCGATCGCTC GCGCCAGCGA GCTTGAAGCC CTGGTCGCCA ACGAAGTTTC GGCGCTGGAG 
CGCGCCTATT CGGACAACGA AGTGCGCATT CGCGCGCTGC TGCAGGACAT CGCACATCAG 
CGCGACAACC TGGTCGGTCA GGCCGAGCAG GTCCGCAGCG CCATTTCCGG TGTGCAGATC 
GACCTCCGCC ACGATATCGC GCTGATCTCG GACGCGATCG CCAGCCGCGT CGACGAAGTC 
GCCAAAAGCA TCACCAGCGC GCTGGAAGAG CGCGGCGCCC ACATCACCAG CGCCCTCGGC 
CACGCCGGCG ACAACATGAT TCTCGCGCTC GGTGAGCGCG GCGGCGAATT GCTCGATCGC 
CTCGAAGAGG CCAGCTCAGA GACGACCCGC GCGGTGCTCG ATGCCAGCGA GCGGCTGACC 
ACCAGCCTCA ACTTCAAAAC CGGCCATGTG CATGCCGAGT TCGTCGAACT GGCCGATCGC 
GTCCACGACA TGATGAACGA GCGGCTCGAC CGTATCACCA CCGATTTCGA GCAGCGGTCT 
TCGACCATCA TCGACGGCAT TTCGGAGCGC ACCGAGCAGG TGCAGGATTC GCTGAAGAAC 
TCCGGCGACT CGCTGCTGCT CGAACTCGAG CTACGCAGCA CCGATTTGGT CAACAAGATC 
GACGACGCCG GCCATCGCCT TGCCGATCAG ATCCTGACCA GCGGCGACAA GGCGAGCGAA 
GCGCTCGACG TCACCGTCAA CACGCTGGTC GCCAAGGTCG TGAGCCAGAC CGAAGCGACC 
CACGACACGC TCAGCATCCA GATGAGCGCG TTCGACGACC TGGTGAAGCT GCAGGGTACC 
GAGCTCGCCG AGAAGTTCGC GCGCGACAGC GGCACGCTCG GCGCGCTGAT CACCCGCCAC 
ATCTCCGAAT TCGACCGCAC AGTGAAGACG TTCGGCGGCG AGATCGTCGA GCGGATGGGC 
CAGCGCACCC AGGACATCAA CGAGACCCTG AAGACCTACG TCGACAATTT CGATCAGCGC 
GTCGCCACCG GCTCGGGCGA AATCACCGCG CGGCTGGACG ACCGTCTGCA TCAGTTCGAA 
AGCCTGTTCG ACACCCGCGT CGGCAGCCTC GACGGCGCGA TCGACAACCG CCTCAAAGCG 
CTCGACGACA CGGTCGGAAA TCATCTCAAC TCGCTCGAAC GCATCCTCGA CACCCGCACC 
GAAGCCGTCA CCGGCAACAT CGACGGCCGG ATCGAGAAGC TCGCCTCGAC GCTGTCGACC 
GGCGCCGCCA ACGCGGTGGA AGCGATCGAC TCGCGGATCG TGCAACTCAA CACCACTTTG 
TCGACCGGCA CCTCGAGCGC GGCGGACATC ATCGACGGCC GCATCGCGAC ACTGACCACG 
ACGCTGTCGA CCGGCGCCGC GAACGCCGTC GAAGTGATCG ACGACCGCAT CACCACGCTC 
ACCACCACGC TGTCGACCGG TACCGTGCAG GCGATCGAAG CGATCGACTC CCGGCTCACC 
CACCTCACCC ACTCACTCAC TGACGGCACC GCGCAGGCGA TCGACGCGAT CGACCGCCGC 
ATCGGCGCGG TCACCGAGAC CATCGACAGC CGCACCGCCA ATCTCAGCAC CACCGTCAGC 
GCACGCTTCC AGGAGATCCA CGACGGCCTG GAAAACCGCG TCACTGCGGT CATCAACGAC 
GTCGACCTCC GCGTGTCGCA GTTCGAGGAT CTGCTCGGCT CGCGCATCGA AGCAGTCGCC 
GGCCGGTTCG AGAGCAGCGG CCGCGAGGCC AGCGAGATGC TGATGACGCG TGCCGAAGAG 
CTGTCGCAGG GCATCAAGAC CAACGTCGCT GACGCCGAAC GCACCCTCAC CCACCTGGTG 
GTCAGCACCA GCGACACCAT CCGCAGCAGC ACTCAGTCGG CGCGGGAATC GATGCTGTCG 
GTGTCGAACG ATGTCGGCGC CCAGCTGCAG GTCACCTCGG CGGAGATCGA ACGCGCACTC 
ACCACGGTCG GCACCACCGC GGCTGCCACC GTCGTGTCGA GCGCGACCGA GGCTCAGGCC 
AAGCTGACCA TGGTGTCGAG CGAGGCCGTG ATGCAGTTCC GCTCGCTGTC GGACGACATC 
GAACGCACGC TGTCGGCCGC CGGCACTGCC ACCGTCGCCA CCGTGCTGGC CGGGGCCCGC 
GAGGCTCAGA CCACGCTGGT CGCGACCTCC ACCGACGTCA CCACCCAGGT TAAGTCGCTG 
GCGTCCGACA TCGAGCGCAC CCTCAGCGAA GTCGGCGGCC ATGCGGCTGC GTCGCTGCTC 
GGCAGTGCCC GCGAGGCCCA GACCACGCTG ACCTCGACCT CGACCGAAGT CGCTACTCAG 
GTGAAATCGC TCGCCTCGGA GATCGAGCGC AGCCTGACCG AGGCCGGCGG CAACACCGCC 
GCGTCGGTGC TGAGCAGCGC CCGCGAGGCT CAGAACGCCC TCACCACCAC GTCCGCCGAC 
GTCGCCAATC AGGTGAAGTC GCTCGCCGTC GACATCGAAC GCACCCTCAC CGGCGCCGGC 
GACACCACCT CGGCCTCGGT GCTGGCGAGC GCCCGCGAAG CTCACGCCAC GCTGGTGTCG 
GCATCGTCCG AAGTCACCGG CCAGATCCGC TCGCTGTCGA CCGACATCGA ACGCACGCTG 
TATGCAGCCG GCAACGCCAC CGCCGAAGCC GTGCTCAGCG GCGCCCGGTC GGCGCAGTCC 
ACCCTGGTCT CGGCCTCGGA AGAAGCCTCC GACAAGGTCA AGTCGCTCAG CGCCGACATC 
CAGCGCACGC TGGTCGAAGC GTCGTCGGAA GCTGCCAACC AAGTCACGAC CCTCACCGCC 
GACGTCGAAC GCCGGCTGTC CGCCTCCGGC GCCAACACGA TCGAGACCAT CGTGGCTGGT 
GCGCGTGAAG CGCAGAACAC CCTGGTGGCG ACCTCGACCG AAGCCGCCAA CCAGGTGAAG 
TCGCTGGCCA GCGACATCGA ACGCACGTTG ACCGCCGCCG GCAGCGCAAC CGCCGGCACG 
CTGCTGGCAA GTGCGCGCGA AGTCCAAACC ACCCTGGTGT CGACTTCGAC CGAGTCGGCC 
GATCAGGTCC GGTCGATCGC CGCCGATGTC GAGCGCACGC TGGTGGCCGC CGGCCGCAGC 
ACCGCCGACT CGATCCTGTC GAGTGCCCGC GAGGCGCAGA CCTCGCTGGC GACCGCGTCG 
GGCGAAGCCG CCAACCACGT CAAGTCGCTG GCGATCGATG TCGAGCGCAC GCTGACCAGC 
GTCGGTGCCG CGACAGCCTC GACTATCCTC GACAGCGCCC GCCAGGTGCA GTCAACGCTG 
ACCACGAGCT CGGTCGACGC CGCCAGTCAG ATCAAGGCGA TCTCCGCCGA GATCGAGCAG 
ACGCTGTCGG CTCTGACCAC CAACACCACC GACCACATCC AGGTCAGCGC CTCGGCGGCC 
CAGGCCACCT TGGTGGCGAT GTCCAACGAG GTCAGCGCGA AGATCAAGTC GACCTCGGCC 
GACGTCGAGC GTTCGGTGTT CGCCGCCAGC GGCAGCTTCG GCTCGACGAT CACCGCCAAG 
AGCGAGGAGA TCGTCGGCTA CGTGCAGCAA CAGGCCGAGC GGCTGTCGCA GATCATCGAC 
GGCAAGCGCG GCGTGCTGGT CGAAGCCATC GCCGGCAAGA CCAACCAGCT CACCGTCGAG 
ATCGACCGCG TCACCAGCGA TGCGCTGACC GCCATTGAGT CTCGCGGCAA GACCTTCTCG 
AACTCGATCC TGACCAACGG CACCGAGGTC GCCCGCTCGA TCACCGGCGC CGGCGATCTG 
GCCACCAACG CGATCAACAA ATCGCTCAAG GACCTCGACC TCGCGTCGCG GTCGGCGATC 
GAACAGTCGC GGCAGGTCTC GATCACCGCG GTCACCGAGA TGCAGGAGAC CAGCAAGATC 
CTGCGCACCG ACACGGTGGC GCTGTTCGAG CGGCTGCGTG AAGGCAACAT CCTGCTGCAG 
GAAGTGCTCA CCGGCGCCCA CGAGAACCTC AACTCGCTGG AGCGCGCGCT GGTCACCCGC 
GTGGCCGACT TCGTCACCAC CATGAACGAG GTCAACGCCC GCAGCGGTGC CGCGACCCAG 
ACGCTGGAAG ACCAGCTCAC CGGCTTCCAC ACCAAGACCG CTCGGGCGCT GGAAGATCTC 
GGGGCGCTGT CGGCGCAGTT CGAAGCGCAC GGCCACGCTT TGGCCGAGGC TGCCGATCTG 
CTCGAGCACA GCAACCGCCA GGCCTCGACC TCGGTCAGCG ATCGCAAGGA AGCGCTGGAA 
TCGCTGGTCA CCACCCTCGA TCTGCGCACC GCCGATCTCG ACCAGCGGCT TGGCCGGTTC 
ACCAGCCTGC TGGATGAATC GCTCGCCGCC GCCGAGGAGC GCGCCCGTGA CGTCGCGCGG 
ATCGTCGCCG AAACCGCCGG TGCCGGCTCT GCCAGCATCA CGCAACAGTT CGAAGCCGTG 
CGCAGCGCCG CCGAGCAGGA GCGCCGTCTC ACTGTCGAGG CGATGCATCA GGTGTACAAG 
CAGGGTACCC AGGAAGCCGA CGCGCTGTTC AAGCAATCGG CCGATCGCTT CACCTCGATC 
GTCCAGGGCA TCAAGCAGAT GGCCGCCGAG ATGCAGCACG AGCTCGAATC CACCCGCGAG 
GAGCTGCGCC GCGGCGTGCT CGAAATCCCG CAGGAGGCTG CCGAGAGCAC CGCGCAGATG 
CGCAAGGTGA TCGTCGACCA GATCGAGGCG CTCGCCGAGC TCAACCGCAT CGTCGCCCGC 
CACGGCCGCG GCATGGACGT GGTGACGCCG AGCCGCGCCG CCACGGTGAC CACCCGCGAG 
GAAGAGCCGG TGCTGGCCGC CGCCAGCGTC GGACGTGCCG AAACGGTCGC CGCCCGCCCG 
GCCCCGCGCA GCCGGGAATC TAGCGCCGCG ACGCTGCCGC CGCCGGACCT CGGCATGCCG 
GCCGGCCCGC GCCGCACCGA AGCGCCGCCG GTCGCGCCGA GCAACGCAGA CCAGGGCCGT 
GACGGCTGGC TGTCGGAGTT GCTGAACCGC GCCGACACCA GCGCCGAACG CGAGCCGCCG 
CGCGGCCGCG CCGCCCAGCA GGCCCAGGCT GCGATGAGCG GCAATCCGCT GGAGTCGCTG 
TCGCTCGACA TCGGCCGGCT GATGGACCGC AACCTCGCGC TGGAAATGTG GGAGCGCTAT 
CAGCGCGGTG AGGCGAAGTC CTTCACCAAG CGGCTGTACA CGCCGGCCGG CCAGAAGGCG 
TTCGACGAAG TCGCCCGCAA GTATCGCAGC GAGCGCAGCT TCAAGCAGAC CGTCGATCGC 
TATATCGCCG AGTTCGAGCG CCTGCTCGAC GAGGTCGCCC GCGACGAGAA CGCCCCGCAA 
GCCCTGCGCG GCCACCTCTC TTCCGAGACC GGGCTGGTCT ACACCCTGCT CGCGCATGCG 
GCCGGACGGC TGGGCTGA 

 

Protein sequence

MANNPKKIKD PTEVALSAIQ EALNIPDAPP AGDDQAAGPK ESVPNSDTPE PSFSELTELA 
GEPRITPPAP SFEPAAERSF ASRPANDDRE TIGQLLQSLQ KGRTTRNVYT LATIFAGVWV 
FGGIILTVSF LPALQALVGQ GSGGTLALAG LAALFFAPVM LFYFLASLAW RGQELRMIAQ 
SMAQVAIRFS EPEIAASDSV VTVGQAIRRE VAAMGDGVER AIARASELEA LVANEVSALE 
RAYSDNEVRI RALLQDIAHQ RDNLVGQAEQ VRSAISGVQI DLRHDIALIS DAIASRVDEV 
AKSITSALEE RGAHITSALG HAGDNMILAL GERGGELLDR LEEASSETTR AVLDASERLT 
TSLNFKTGHV HAEFVELADR VHDMMNERLD RITTDFEQRS STIIDGISER TEQVQDSLKN 
SGDSLLLELE LRSTDLVNKI DDAGHRLADQ ILTSGDKASE ALDVTVNTLV AKVVSQTEAT 
HDTLSIQMSA FDDLVKLQGT ELAEKFARDS GTLGALITRH ISEFDRTVKT FGGEIVERMG 
QRTQDINETL KTYVDNFDQR VATGSGEITA RLDDRLHQFE SLFDTRVGSL DGAIDNRLKA 
LDDTVGNHLN SLERILDTRT EAVTGNIDGR IEKLASTLST GAANAVEAID SRIVQLNTTL 
STGTSSAADI IDGRIATLTT TLSTGAANAV EVIDDRITTL TTTLSTGTVQ AIEAIDSRLT 
HLTHSLTDGT AQAIDAIDRR IGAVTETIDS RTANLSTTVS ARFQEIHDGL ENRVTAVIND 
VDLRVSQFED LLGSRIEAVA GRFESSGREA SEMLMTRAEE LSQGIKTNVA DAERTLTHLV 
VSTSDTIRSS TQSARESMLS VSNDVGAQLQ VTSAEIERAL TTVGTTAAAT VVSSATEAQA 
KLTMVSSEAV MQFRSLSDDI ERTLSAAGTA TVATVLAGAR EAQTTLVATS TDVTTQVKSL 
ASDIERTLSE VGGHAAASLL GSAREAQTTL TSTSTEVATQ VKSLASEIER SLTEAGGNTA 
ASVLSSAREA QNALTTTSAD VANQVKSLAV DIERTLTGAG DTTSASVLAS AREAHATLVS 
ASSEVTGQIR SLSTDIERTL YAAGNATAEA VLSGARSAQS TLVSASEEAS DKVKSLSADI 
QRTLVEASSE AANQVTTLTA DVERRLSASG ANTIETIVAG AREAQNTLVA TSTEAANQVK 
SLASDIERTL TAAGSATAGT LLASAREVQT TLVSTSTESA DQVRSIAADV ERTLVAAGRS 
TADSILSSAR EAQTSLATAS GEAANHVKSL AIDVERTLTS VGAATASTIL DSARQVQSTL 
TTSSVDAASQ IKAISAEIEQ TLSALTTNTT DHIQVSASAA QATLVAMSNE VSAKIKSTSA 
DVERSVFAAS GSFGSTITAK SEEIVGYVQQ QAERLSQIID GKRGVLVEAI AGKTNQLTVE 
IDRVTSDALT AIESRGKTFS NSILTNGTEV ARSITGAGDL ATNAINKSLK DLDLASRSAI 
EQSRQVSITA VTEMQETSKI LRTDTVALFE RLREGNILLQ EVLTGAHENL NSLERALVTR 
VADFVTTMNE VNARSGAATQ TLEDQLTGFH TKTARALEDL GALSAQFEAH GHALAEAADL 
LEHSNRQAST SVSDRKEALE SLVTTLDLRT ADLDQRLGRF TSLLDESLAA AEERARDVAR 
IVAETAGAGS ASITQQFEAV RSAAEQERRL TVEAMHQVYK QGTQEADALF KQSADRFTSI 
VQGIKQMAAE MQHELESTRE ELRRGVLEIP QEAAESTAQM RKVIVDQIEA LAELNRIVAR 
HGRGMDVVTP SRAATVTTRE EEPVLAAASV GRAETVAARP APRSRESSAA TLPPPDLGMP 
AGPRRTEAPP VAPSNADQGR DGWLSELLNR ADTSAEREPP RGRAAQQAQA AMSGNPLESL 
SLDIGRLMDR NLALEMWERY QRGEAKSFTK RLYTPAGQKA FDEVARKYRS ERSFKQTVDR 
YIAEFERLLD EVARDENAPQ ALRGHLSSET GLVYTLLAHA AGRLG