| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4347 |
|---|
| Symbol | |
|---|
| ID | 6412031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4673156 |
|---|
| End bp | 4673953 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642714229 |
|---|
| Product | phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| Protein accession | YP_001993318 |
|---|
| Protein GI | 192292713 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase |
|---|
| TIGRFAM ID | [TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0584445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA ACAAAACACG GTACATCCCC ATGAGCCGGC GACGTCGCAT TTACGAAGGC
AAGGCCAAGG TGCTGTATGA AGGTCCGGAA CCCGGAACGC TGATTCAGCA CTTCAAGGAC
GACGCCACCG CGTTCAATGC CAAGAAGCAC CAGGTGATCG AGGGCAAGGG CGTCCTCAAC
AACCGGATCT CCGAGTACCT GTTTCAGCAC CTCAACGACA TCGGGGTGCC GACCCATTTC
ATCCGCCGCC TCAACATGCG CGAGCAGCTG ATCCGCGAAG TCGAGATCGT GCCGCTCGAG
GTGGTGGTGC GCAACGTCGC CGCGGGTTCG CTGTCGCAGC GGCTCGGGAT CGAGGAGGGC
ACTCAGCTGC CGCGCTCGAT CATCGAGTTC TACTACAAGA ACGACCAGCT CAACGACCCG
ATGGTCTCGG AAGAGCACAT CACCGCGTTC GGCTGGGCGA CCCCGCAGGA GATCGACGAC
ATCATGGCGC TGGCGATCCG CGTCAATGAT TTCCTCACCG GTCTCTTCCT CGGCATCGGC
ATCCGCCTGG TCGACTTCAA GATGGAGTGC GGCCGGCTGT TCGAAAGCGA GATGATGCGC
ATCATCGTCG CCGACGAGAT CTCGCCGGAC AGCTGCCGGC TGTGGGACAT CAAGTCGAAC
GAGAAGCTCG ACAAGGACCG CTTCCGCCGC GATCTCGGTG GCCTGCTCGA GGCCTACACC
GAAGTCGCCA AGCGACTCGG CATCCTGATG GAAAACGAGC GCCCGATCGG CTCCGGCCCG
GTGCTGGTGA AGGGCTAA
|
|---|
| Protein sequence | MDFNKTRYIP MSRRRRIYEG KAKVLYEGPE PGTLIQHFKD DATAFNAKKH QVIEGKGVLN
NRISEYLFQH LNDIGVPTHF IRRLNMREQL IREVEIVPLE VVVRNVAAGS LSQRLGIEEG
TQLPRSIIEF YYKNDQLNDP MVSEEHITAF GWATPQEIDD IMALAIRVND FLTGLFLGIG
IRLVDFKMEC GRLFESEMMR IIVADEISPD SCRLWDIKSN EKLDKDRFRR DLGGLLEAYT
EVAKRLGILM ENERPIGSGP VLVKG
|
|---|
| |