| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4310 |
|---|
| Symbol | |
|---|
| ID | 6411994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4640025 |
|---|
| End bp | 4641197 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642714192 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001993281 |
|---|
| Protein GI | 192292676 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAG TTGGTGCCGA TGCGCCGAAG CCTGGCGCGC CGATCAAGGA GCCGCGGTTC
GGCTTCCTGC GCCGCACCTA CGCGATGCTG GTCAAGGAGC TGATCCAGCT CAAGCGCGAC
CGGCTGACCT TTGCGATGAT CATCGTGATC CCGGTGATGC AACTTCTGCT GTTCGGCTAC
GCCATCAACA CCACGCCGCG GCATCTGCCG ACCGCGGTGC TGCTGCAGGA GGATTCCGAC
CTCGGCCGCT CGATCCTGAA GGCGCTGGAG AACACCGCGT ATTTCAAATT CACCTGCGAA
GTACACAGCG TCGCCGAGTT CGACGATCTA TTGCTGTCCG GGCGTGTACT GTTCGGGGTC
GAAATCCCGC GTGGCTTTGA ACGCGCGGTG CGGCGCGGCG AGAAGCCGGC AATCCTGGTT
GCGGCTGATG CCACCGATCC GGTTGCGGCC GGCTCGGCGC TGTCGGCGCT CGGACAGATC
GTGCAGACCG CGCTGATGCA CGACCGCGTC GGCGGCGACC CCGCCAATCC GCCATTCGAG
ATCCGCGCCC ACGCCCGCTA CAATCCGGCC GCCTCGTCAC GGCTCAACAT CGTGCCTGGT
CTGGTCGGAA CCATCCTGAC CATGACCATG CTGATCTTCA CTGCGCTGTC GGTGACCCGC
GAGATCGAGC GCGGCACCAT GGAGAACCTG CTGTCGATGC CGATCACCCC GGTCGAGGTG
ATGCTCGGCA AGATCCTGCC GTATGTCGGC GTCGGCTTCA TTCAGGCGTC GCTGATCCTC
GGCATCGGCG TGCTGCTGTT CGGCGTGCCG CTGCGCGGTA GCCTGGCGAT GCTGGCGCTG
TTGTCGACGC TGTTCATCAC CACGAACCTC GCGATCGGCT ACACCTTCTC GACGTTGGTG
CAGAACCAGC TGCAGGCGAT GCAGGCGTCG ATGATGTTCT TCCTGCCGTC GATCCTGCTG
TCCGGCTTCA TGTTTCCGTT CGCCGGGATG CCGATTTGGG CGCAGTACAT CGGCGAGTGT
CTGCCACTGA CGCATTACCT GCGCATCGTC CGCGCGATCA TGCTGAAGGG CTCGACGCTG
GAGAACCTGC AATACGACGC CCTCGCGCTG CTGACGCTGA TGCTGATCGC GATGACGATC
GCCGTCACCC GATTCCGCCG CACGCTCGAC TGA
|
|---|
| Protein sequence | MTAVGADAPK PGAPIKEPRF GFLRRTYAML VKELIQLKRD RLTFAMIIVI PVMQLLLFGY
AINTTPRHLP TAVLLQEDSD LGRSILKALE NTAYFKFTCE VHSVAEFDDL LLSGRVLFGV
EIPRGFERAV RRGEKPAILV AADATDPVAA GSALSALGQI VQTALMHDRV GGDPANPPFE
IRAHARYNPA ASSRLNIVPG LVGTILTMTM LIFTALSVTR EIERGTMENL LSMPITPVEV
MLGKILPYVG VGFIQASLIL GIGVLLFGVP LRGSLAMLAL LSTLFITTNL AIGYTFSTLV
QNQLQAMQAS MMFFLPSILL SGFMFPFAGM PIWAQYIGEC LPLTHYLRIV RAIMLKGSTL
ENLQYDALAL LTLMLIAMTI AVTRFRRTLD
|
|---|
| |