Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4293 |
Symbol | |
ID | 6411977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4619428 |
End bp | 4620219 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642714175 |
Product | PGAP1 family protein |
Protein accession | YP_001993264 |
Protein GI | 192292659 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00000482527 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCGCCG ACCGCGGCGC CAGCCAGAAT CGCGAGCGGC TGAAGCCGCC GAGCGTCGCG CTGCTGCTCG CCGAGGCGCG CAGCTTCTTC GAATTCAACG CCAGCCTGCT GCTGTCGCCG CTGCTGCTGC AGGCGCCGCG CGGCGATGGC CATCCGGTGC TGGTGCTGCC CGGATTGCTC GCGAGCGACC TGTCGACTGC GCCGATGCGG CGCTATCTCA AGCAGCTCGG CTATCAGGTG TTCGCCTGGG AGCTCGGCCG CAATCTCGGC GGCATCTACC GAATGCGCGC CCGCCTGCGC GACCGGCTCG CTGCCGTCCA TGAGACGACC GGCCGCAAGG TCAGCCTGGT CGGCTGGAGC CTCGGCGGCG TCTATGCGCG CGATCTGGCG TTGCATGCGC CGGACATGGT GCGCGACATC ATCACCCTCG GGAGTCCGTT CACCGGCGAC GTCACCGCCA CCAATGCCAA GCGGATCTAC GAGAAGCTGT CGGGCGAGGA ACTGACCGAG GTTCACCTCG AAGATCTTGA ACCGCTCGGT GGCGAAATGC CGGTGCCGAC TACGTCGATC TATTCACGCA CCGACGGCAT CGTGAACTGG CGCACCTCGC AGCTGGCGCC GTCGCCGCGC GCCGAGAACA TCGAGGTGGT ACTCGCCAGC CATATCGGCC TGATCGTCAA CGCCGCGGTG CTGTGGGCGA TCGCCGACCG GCTGGCGCAG CCGGAGGGCG TCTTCACACC GTTCGATCGC TCCGGTCCAT TTGGCTTCGC CTACGCCCCG CCGAACCGCT AA
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Protein sequence | MLADRGASQN RERLKPPSVA LLLAEARSFF EFNASLLLSP LLLQAPRGDG HPVLVLPGLL ASDLSTAPMR RYLKQLGYQV FAWELGRNLG GIYRMRARLR DRLAAVHETT GRKVSLVGWS LGGVYARDLA LHAPDMVRDI ITLGSPFTGD VTATNAKRIY EKLSGEELTE VHLEDLEPLG GEMPVPTTSI YSRTDGIVNW RTSQLAPSPR AENIEVVLAS HIGLIVNAAV LWAIADRLAQ PEGVFTPFDR SGPFGFAYAP PNR
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