Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4256 |
Symbol | |
ID | 6411940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4575860 |
End bp | 4577020 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642714138 |
Product | hopanoid biosynthesis associated radical SAM protein HpnH |
Protein accession | YP_001993227 |
Protein GI | 192292622 |
COG category | [R] General function prediction only |
COG ID | [COG0535] Predicted Fe-S oxidoreductases |
TIGRFAM ID | [TIGR03470] hopanoid biosynthesis associated radical SAM protein HpnH |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.59824 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTATTC CGTTTCACAA GGAACTGGTG ATCGGCGGTT ATCTGCTGAA GCAGAAGCTG CTCGGGCGGA AGCGTTATCC GCTGGTACTG ATGCTGGAGC CGCTGTTCCG CTGTAACCTC GCCTGCGCCG GCTGCGGCAA GATCGACTAT CCCGACGCGA TCCTGAACCG CCGGATGACC GCACAAGAGT GCTGGGACGC CGCCGAGGAA TGCGGCGCGC CGATGGTTGC GATCCCGGGC GGCGAACCGC TGATCCACAA GGAGATCGGC GAGATCGTGC GCGGCCTGGT GGCGCGCAAG AAGTTCGTGT CGCTGTGCAC CAACGCGCTG CTGCTCGAGA AGAAGCTGCA TCTGTTCGAG CCGTCGCCCT ACCTGTTCTT CTCGGTGCAT CTCGACGGCC TGAAGGAGCA CCACGACAAG GCGGTGTCGC AGCAGGGCGT GTTCGACCGC GCAGTCGCGG CGATCAAGGC CGCCAAGGCC AAGGGCTTCA CCGTCAACGT CAACTGCACG GTGTTCGACG GCTACGCCGC CGAAGACATC GCCAAGTTCA TGGACTTCAC CGAGGAACTC GGCGTCGGCG TCTCGATCTC GCCGGGCTAC GCCTATGAGC GCGCTCCGGA CCAGGAGCAC TTCCTCAACC GCACCAAGAC CAAGAACCTG TTCCGCGAGG TGTTCGCGCG CGGCAAGGGC AAGAAGTGGA GCTTCATGCA CTCCAGCATG TTCCTCGACT TCCTGGCCGG CAATCAGGAG TTCGAGTGCA CGCCGTGGGG TATGCCGGCG CGCAACATTT TCGGCTGGCA GAAGCCCTGC TACCTGCTCG GCGAAGGCTA CGCCAAGACT TTCCAGGAGC TGATGGAAAC CACCGATTGG GATTCCTACG GCACCGGCAA GTACGAGAAG TGCGCCGACT GCATGGCGCA TTGCGGCTAC GAACCGACCG CGGCGATGGC CTCTCTCAAC AATCCGCTGA AGGCCGCCTG GGTGGCGCTC CGCGGCATCA AGACCTCGGG CCCGATGGCG CCGGAGATCG ACATGTCGAA GCAGCGCCCG GCGCAGTACG TGTTCTCCGA GCAGGTCCAG AAGACGCTGA CGCAGATCCG CCAGGACGAG GCCGCCGAGG CCAAGGACAA GCGGCAGGCG GAAAGGTCGA CGGCGGCCTG A
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Protein sequence | MAIPFHKELV IGGYLLKQKL LGRKRYPLVL MLEPLFRCNL ACAGCGKIDY PDAILNRRMT AQECWDAAEE CGAPMVAIPG GEPLIHKEIG EIVRGLVARK KFVSLCTNAL LLEKKLHLFE PSPYLFFSVH LDGLKEHHDK AVSQQGVFDR AVAAIKAAKA KGFTVNVNCT VFDGYAAEDI AKFMDFTEEL GVGVSISPGY AYERAPDQEH FLNRTKTKNL FREVFARGKG KKWSFMHSSM FLDFLAGNQE FECTPWGMPA RNIFGWQKPC YLLGEGYAKT FQELMETTDW DSYGTGKYEK CADCMAHCGY EPTAAMASLN NPLKAAWVAL RGIKTSGPMA PEIDMSKQRP AQYVFSEQVQ KTLTQIRQDE AAEAKDKRQA ERSTAA
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