Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4255 |
Symbol | ispH |
ID | 6411939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4574876 |
End bp | 4575820 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642714137 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_001993226 |
Protein GI | 192292621 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.224121 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCTGAAG TCCGCCCCCT CGAAGTGTTC CTTGCCCAAC CCCGTGGTTT CTGCGCTGGC GTGGTGCGTG CGATCGAGAT CGTCGAGCGC GCGCTGGAGA AGTACGGTCC GCCGGTCTAT GTGCGGCATG AGATCGTGCA TAACAAATAC GTGGTCGAGA GCCTGAAGGC CAAAGGCGCG ATCTTCGTCG AGGAGCTGTC GGAAGTTCCG CCGAAGGCCG TGACCGTGTT CAGCGCCCAC GGCGTCGCCC GCAGCATCGA GGAAGAGGCC GCGGCGCGTG ACCTGCCGGT GCTCAACGCC ACCTGCCCGC TGGTCACCAA AGTGCATAAC CAGGGCAAGC GCTATACGTC GAAGGGCCGC ACCCTGATCC TGATCGGCCA TGCCGGCCAT CCGGAAGTCG AAGGTACGAT GGGCCAGGTT CCCGGTCCTG TGCTGCTGGT GCAGAACCTC GACGACGTCG CGGCGCTGAC GCTGCCGCCG GAAACCCCGG TGGCGTACAT CACCCAGACC ACGCTGAGCG TCGACGACAC CAAGGACATC ATCGTGGCGC TTTCAAAGAA ATTCCACGAT ATCGAAGGCC CGGACACCCG CGACATCTGC TATGCCACGC AAAACCGGCA ATCGGCGGTG CGGCAGATGA GCAAGCTGGT CGACCTGATC CTGGTGGTCG GAGCCAACAA CAGTTCGAAC TCCAACCGAC TGCGGGAAAT CGGCACCGAA GCCGGCATCC CGAGCTACCT GATCGCCGAT GGCAGCGAGC TCGACCCGGC CTGGCTCGAC GGCAAGAAGG CGGTCGGCAT CACCGCCGGC GCCTCGGCCC CGGAAGTGCT GGTCGACGAC GTGATCGAAG CGCTGCGCCG GATCGTCCCG GTCACCGTTT CGGTGCTGCC GGGCCGCGAA GAAAACATCG AATTCGTTCT GCCCGCGGAA CTGGCCACCG CCTGA
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Protein sequence | MSEVRPLEVF LAQPRGFCAG VVRAIEIVER ALEKYGPPVY VRHEIVHNKY VVESLKAKGA IFVEELSEVP PKAVTVFSAH GVARSIEEEA AARDLPVLNA TCPLVTKVHN QGKRYTSKGR TLILIGHAGH PEVEGTMGQV PGPVLLVQNL DDVAALTLPP ETPVAYITQT TLSVDDTKDI IVALSKKFHD IEGPDTRDIC YATQNRQSAV RQMSKLVDLI LVVGANNSSN SNRLREIGTE AGIPSYLIAD GSELDPAWLD GKKAVGITAG ASAPEVLVDD VIEALRRIVP VTVSVLPGRE ENIEFVLPAE LATA
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