Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4249 |
Symbol | |
ID | 6411933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4564119 |
End bp | 4566131 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642714131 |
Product | Carbohydrate-selective porin OprB |
Protein accession | YP_001993220 |
Protein GI | 192292615 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGAAACA CTCTCTTTTT TCCGATCCTC GCTGCCGCCA CGATCTGCGC CGCGCCCGCC GGTGCGGCCG ATCTCGCGCG CAAGGCGCCG GAGGCGCCGC GCGCGGTGTT CGACTGGAGC GGGTTCTATA TCGGCGCGCA TTTCAGCGCG GTCGCAGGTC ACTCGAACTG GAGCTCCACC CCGGCCGGCG GCAGCGGCTC GATCGATCTG TTCGATGCGT TTCAGCTATT TAAAGGCACT GGCAGCTACG TGATCGGCCT CCAGGCCGGC TACAACTGGA TGCTGCCGTC GCGCTGGCTG ATCGGCATCG AGGCCGACCT CAATTCACCG AACACCCTCG GCGGCAACAC CGGCAACACG CTGCCGTCGG GCACGGTCGG CGGCCATGAT CATCAGGCGC TGCTCGGCGG CACCGTGCGC GGCCGGGTCG GCTACGCGTT CGACGGCTGG CTACCCTACG TCACCGCCGG CTTCGCCTGG AGCTACGACC GGCTGCGCTG GCCGCCGGAT CCCTCGCTCG CGCAGCAGGA GACCGCGCTG TTGTGGCGGC TCGGCTGGGC CGCCGGCGCT GGCGTCGACG TGCCGCTATC GCCGGCCTGG AGCGCGCGCG CCGAATATCT GGCGACCGGG TTCGGTTCCG GCACCGTCAG CTTTCCGATC GCCGGCCAGA GCGTGTCGTC CGACGTGCTG ACCCACGCGG TCCGGCTCGG CCTGAACTAT CGGCTCGGCG ACGACCTGAC CAAGTCCGAC GTGTTCACCA AGGGCATCGA CGCGCTGGAG CTGGAGCGCT TCGCGGTGCA CGGCCAGAGC ACCTTCACCT GGCAATACGC GCCCGGATTC CGCTCGCCGT ATAGCGGCGC CAACAGCCTC GCCCCGAACC AGGCGCGCGA GACCTTCGAC GCCACGCTCT ACATCGGCGC CAAGCTGTGG GACGGGGCCG AGTTCTGGGT CAATCCGGAG ATCAATCAGG GCTTCGGCCT CAGCGGCACC TTCGGCATCG CGTCGTTCCC GAGCGCGGAG TCCTACAAGG TCGGCGCCAA CTATCCGTAT GCGCGGGTGC CGCGCTATTT CGTCCGCCAG ACGCTCGATC TCGGCGGTGC GGTCGAAACC GTGCAGGGCG GGCCCAACCA GTTCGCCGGC AAGCAATCCG CCGAGCGCAT CGTCATCACC GCCGGCAAGT TCTCGGTCGG CGACATCTTC GACGTCAACA AATACGCCCA CGACCCGCGC GTCGACTTCC TCAACTGGGG CCTCGCCGAC GCGCTGACCT TCGACTACGC GGCCGACGCC TGGGCCTTCA CCTACGGCAC CGCGGTCGAG TGGTACACCG GCGCCTGGAC GGTGCGCGGC GGCGTGTTCG ATCTGCCGCA GACGCCGAAC AGCACTGATC TTGATTCCAG CTTCGGACAG TTCCAACTGG TTGGTGAACT CGAACACCGC CATGAACTGT GGGGCCTGGC CGGCAAGGTG CTGGTCACCG GCTTCCTGAA CCGCGCCCGA CTCGGCAATT TCACCGATGC GGTCCGCGCC GCGCAGGCGA CCGGCGCAAC GCCGAACATC GCCGACGTGC GGCGCTACAC CTCCAAGACC GGCCTGTCCG CCAGCCTGGA GCAGCAGCTC ACCGCCGACA TCGGCATGTT CGCGCGCGCC GGCTTCAGCA GCCCGAACCT CGAGACCAAC GCCTTCACCG ATTCCGACCG CACGGTGTCG GCGGGCCTGT CGCTGTCGGG ACGGATGTGG GGCCGCGCCG ACGACACCGT CGGCATCGGC GGCCTGCTCA ACCACATCTC GGCGTCGCGG ATCGCATATC TCGACGCCGG CGGCCTGACG GCGATCATCG GCGATGGCCG CCTGCCCAAC CCCGGCGACG AGAAGGTGTT CGAAGCCTAT TACAGCCTGC CGGTGTATTC GTGGCGGCTG ACCGCGGACT ACCAGTTCGT CGCCAACCCG GCCTTCAACC GCGACCGCGG CCCGGTCCAC CTGATCGCCA CGCGACTGCG CACGCAGTTC TGA
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Protein sequence | MRNTLFFPIL AAATICAAPA GAADLARKAP EAPRAVFDWS GFYIGAHFSA VAGHSNWSST PAGGSGSIDL FDAFQLFKGT GSYVIGLQAG YNWMLPSRWL IGIEADLNSP NTLGGNTGNT LPSGTVGGHD HQALLGGTVR GRVGYAFDGW LPYVTAGFAW SYDRLRWPPD PSLAQQETAL LWRLGWAAGA GVDVPLSPAW SARAEYLATG FGSGTVSFPI AGQSVSSDVL THAVRLGLNY RLGDDLTKSD VFTKGIDALE LERFAVHGQS TFTWQYAPGF RSPYSGANSL APNQARETFD ATLYIGAKLW DGAEFWVNPE INQGFGLSGT FGIASFPSAE SYKVGANYPY ARVPRYFVRQ TLDLGGAVET VQGGPNQFAG KQSAERIVIT AGKFSVGDIF DVNKYAHDPR VDFLNWGLAD ALTFDYAADA WAFTYGTAVE WYTGAWTVRG GVFDLPQTPN STDLDSSFGQ FQLVGELEHR HELWGLAGKV LVTGFLNRAR LGNFTDAVRA AQATGATPNI ADVRRYTSKT GLSASLEQQL TADIGMFARA GFSSPNLETN AFTDSDRTVS AGLSLSGRMW GRADDTVGIG GLLNHISASR IAYLDAGGLT AIIGDGRLPN PGDEKVFEAY YSLPVYSWRL TADYQFVANP AFNRDRGPVH LIATRLRTQF
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