| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4233 |
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| Symbol | |
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| ID | 6411917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4544227 |
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| End bp | 4545000 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714115 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001993204 |
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| Protein GI | 192292599 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGA ATCCGTTCGA TCTGTCCGGC AAGGTCGCCG TCGTCACTGG CTCGTCGCGT
GGCATCGGTC GCGCGTCGGC GGAGCTGCTG GCCAAGCTCG GCGCCAAGGT GGTGATATCG
AGCCGCAAGG CCGACGCCTG CGAGGAAGTT GCCGAAGGCA TCCGCAAGGA AGGCGGCGAC
GCGCACGTCA TCGCCTGCAA CATCTCGCGC AAGGCCGAGG TCGACGGGCT GATCGACGGC
GCGACCGCGA AATACGGCAA GGTCGACATC CTGGTCTGCA ACGCCGCGGT GAACCCGTAT
TACGGTCCGC TGCTCGACAT CGCCGACGAA GCGTTCGACA AGATCATGGC GTCGAATGTC
AAGAGTAACA TCTGGCTGTG CGCCCGCGCG ATTCCGCAGA TGGCGGAGCG CGGCAATGGC
TCGGTGGTGA TCATCTCGTC GATCGGCGGT TTGCGCGGCT CCACCGTGAT CGGCGCCTAC
GGCATCTCGA AGGCCGCCGA CTTCGCGCTG TGCCGCAGCC TCGCCGGCGA GTGGGGCCCC
AAGGGCGTCC GCATCAACGC CATCGCGCCG GGCCTGGTCA AAACCGACTT CGCCCGCGCG
CTGTGGGAAG ACGAGGCCAA CCTGAAGCGC CGCACCGCCG GCACCCCGCT ACGCCGGATC
GGCGAGCCGC ACGAAATCGC CGGCGCCGTC GCGTATTTGG GCTCGGATGC CTCGACCTTC
ATGACCGGCC AGACCATCGT GATCGACGGC GGCGTCACGA CGGCGTCGGT GTAA
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| Protein sequence | MTTNPFDLSG KVAVVTGSSR GIGRASAELL AKLGAKVVIS SRKADACEEV AEGIRKEGGD
AHVIACNISR KAEVDGLIDG ATAKYGKVDI LVCNAAVNPY YGPLLDIADE AFDKIMASNV
KSNIWLCARA IPQMAERGNG SVVIISSIGG LRGSTVIGAY GISKAADFAL CRSLAGEWGP
KGVRINAIAP GLVKTDFARA LWEDEANLKR RTAGTPLRRI GEPHEIAGAV AYLGSDASTF
MTGQTIVIDG GVTTASV
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