Gene Rpal_4225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4225 
Symbol 
ID6411909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4535169 
End bp4535456 
Gene Length288 bp 
Protein Length95 aa 
Translation table11 
GC content57% 
IMG OID642714107 
ProductExcinuclease ABC C subunit domain protein 
Protein accessionYP_001993196 
Protein GI192292591 
COG category[L] Replication, recombination and repair 
COG ID[COG2827] Predicted endonuclease containing a URI domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0073463 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTTACT ACGTCTATCT CCTCGCCAGC GGAAAGCACG GAACGCTCTA TCTTGGCGTG 
ACCAACGATC TAGTACGCCG CGTGCATGAA CATCGCAGCA AGGCAGCGCC GGGATTCTCC
GAGCGTTACA GCATCGATCG GCTGGTGTGG TTCGAGATCT ACAACGACGC TGTCACCGCG
ATCACGCGGG AGAAGCAGCT CAAGAAGTGG CGGCGTGACT GGAAGATCAG GCTGATCGAG
GAACAGAACC CGGACTGGTC CGATCTCTAT CCCGGAATTT GCAGTTAG
 
Protein sequence
MPYYVYLLAS GKHGTLYLGV TNDLVRRVHE HRSKAAPGFS ERYSIDRLVW FEIYNDAVTA 
ITREKQLKKW RRDWKIRLIE EQNPDWSDLY PGICS