Gene Rpal_4062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4062 
Symbol 
ID6411746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp4361000 
End bp4361650 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content66% 
IMG OID642713944 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001993033 
Protein GI192292428 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTGCAC CCACATCGGC GGCGGCAATT CACAGCGACG AGGACAGCGC CAAGCGGCGC 
CAAATCCTCG ACGGTGCCCG CGCGGTGTTT CTGGAGTTCG GCTTCGACGG CGCCAGCATG 
GGCGAGATCG CCCGCGCCGC CGGCGTCTCC AAGGGCACGC TGTATGTGTA CTTCGCCGAC 
AAGAATTCGC TGTTCTGCGA GATCGTCGAG CAGGAGAGCC TGGCGCAGGG GATGCTGTCG 
TTCGAATTCG TTCCCGATCG GGACATCGAA GCGACGCTGC GCGCGTTCGG CAACGCCTAT 
ATCGCGCTGA TCTGCAATCC GCGCGGTGCA TCCGCGATCC GTACCGTGAT GGCGATCGCC 
GAGCGGATGC CGGAGATCGG ACGGCGCTAC TACGAGCGGG TGATCGCCAA CACCATCGGC 
CGGTTCGGGC GCTATCTGCA GGCCCAGGTC GCGGCCGGCG TATTGCAGAT CGACAACTGC 
GACCTCGCCG CCGCGCAGTT CATGCAGGCC TGTCAGGCAA CGCTGTTTCT GCCGTTCATC 
TTCCAGACGT CGGAGCCGCC TTCGCCCGCG CGAATCGCCG GCGTGGTCGA CAGCGCCACC 
GCGCTGTTCC TCGCCGCCTA TCGGGCGCCG AAAGCCAGCG GCTCGAACTA A
 
Protein sequence
MVAPTSAAAI HSDEDSAKRR QILDGARAVF LEFGFDGASM GEIARAAGVS KGTLYVYFAD 
KNSLFCEIVE QESLAQGMLS FEFVPDRDIE ATLRAFGNAY IALICNPRGA SAIRTVMAIA 
ERMPEIGRRY YERVIANTIG RFGRYLQAQV AAGVLQIDNC DLAAAQFMQA CQATLFLPFI 
FQTSEPPSPA RIAGVVDSAT ALFLAAYRAP KASGSN