Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4039 |
Symbol | lpxC |
ID | 6411722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4331934 |
End bp | 4332896 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642713921 |
Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
Protein accession | YP_001993010 |
Protein GI | 192292405 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.685432 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTCA GCCGGCAAAC CACGCTGCGT TCGCAAGCCA CGGTGACGGG CGTAGGTGTT CATTCGGGCC GTCCTGTGAA TCTGACGCTG GGACCCGCAG ATATCGATGC GGGTTTTCTT TTTGTCCGGA CCGGACTTGA TGGCGCCGAT CGCGAGATCA AGGCGACGTC CAAGTCGGTG GTCGCCACCG AGCTGGCCAC CGTCCTCGGC GACAGCGACG GTCCGCTGGT CTCCACCGCC GAACACGTTC TCTCCGCGCT GCGCGGCATG GGCATCGACA ACGCCACGAT CGAAGTCGAC GGCCCCGAAG TCCCGATCAT GGACGGCAGC GCCGCCCCGT TCGTCGCCGC CATCGACCAG GCCGGCCTTC GCGAGCAGGC TGCCCCCCGC AAATACCTCC AGATTCTGAA GCCGGTCTCC GCCGCGATCG GCGAATCCTT CGGCGAATTC CGGCCCTACG CCGCCGGCTT CCGCGTCGAA GTCGAAATCG ACTTTTCCAA TCCGCAGATC GGCAAGCAGA AATATGCGCT CGCGGTCGAG CCGGAGATCT TCCGCCGCGA AGTCGCGCGC GCCCGCACCT TCGGCCGCAT GAATGACGTC GCCCGGCTGT GGAAGATGGG CTACGCGCTC GGCGCCTCGT TCGAAAACTC GGTGGTGTTC GACGACGACC GTCTGCTCAA CCCCGAAGGC CTGCGCTACT CCGACGAATG CGCCCGCCAC AAGGCGCTGG ACGCTATCGG AGACCTGGCG CTCGCCGGCC TGCCGATCCT CGGCGCCTAC CGCTCGGTGC GCGGCGGCCA CAAGCTCAAC CACACCGTGC TCACCGCTCT GTTGGCTGAT CGCAGCGCTT GGCGCGTGAT CGAAGCCGAG CCGGCGCGTC GCGCCGTTCG CGGCCACGCC GAAGCCGTCA CCGGACTGGT CGGCGGCATG GTGGCTCCGG CCTACGGCCC GGACGTGTCC TGA
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Protein sequence | MKFSRQTTLR SQATVTGVGV HSGRPVNLTL GPADIDAGFL FVRTGLDGAD REIKATSKSV VATELATVLG DSDGPLVSTA EHVLSALRGM GIDNATIEVD GPEVPIMDGS AAPFVAAIDQ AGLREQAAPR KYLQILKPVS AAIGESFGEF RPYAAGFRVE VEIDFSNPQI GKQKYALAVE PEIFRREVAR ARTFGRMNDV ARLWKMGYAL GASFENSVVF DDDRLLNPEG LRYSDECARH KALDAIGDLA LAGLPILGAY RSVRGGHKLN HTVLTALLAD RSAWRVIEAE PARRAVRGHA EAVTGLVGGM VAPAYGPDVS
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