| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4004 |
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| Symbol | |
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| ID | 6411686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4291100 |
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| End bp | 4292026 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713886 |
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| Product | HflC protein |
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| Protein accession | YP_001992975 |
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| Protein GI | 192292370 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.781168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCCG GAGTCGCAGG AGCCGTCGCG CTGATCGTTG CGTTGGTCGC GATCATCGTC
GGCTGGTCGT CGCTGTTCAC CGTGAGCCAG ACCGAGCAGG TGCTGCTGGT CCGCCTCGGT
GAGCCGGTGC GGGTCGTCAC CGAGCCGGGT CTCCACTTCA AGGCCCCGTT CATCGATACG
GTGATCAGCA TCGACAAGCG GATTCTCGAC CTCGAGAACC CGTCCCAGGA AGTCATCGCC
GCCGACCAGA AGCGGCTGGT GGTCGACGCG TTCGCGCGTT ACCGGATCAA GAACGCGCTG
CGCTTCTATC AGAGCGTCGG CTCGATCCCG GCCGCCAACG TCCAGCTCAC CACGCTGCTC
AACGCGTCGC TGCGCCGTGT GCTCGGCGAG GTCACGTTCA TCCAGGTGGT GCGCGACGAG
CGCGAAGGCT TGATGGCGCG AATCCGCACC CAGCTCGACA AGGAAGCCGA AGGCTACGGC
ATCTCGGTGG TCGACGTCCG TATCCGCCGC GCCGATCTGC CCGAGCAGAA CAGCCAGGCG
GTGTATCAGC GGATGCAGAC CGAGCGTCAG CGCGAAGCCG CCGAGTTCCG CGCGCAGGGC
GGCCAGAAGG CGCAGGAGAT CCGCTCCAAG GCCGACCGCG AAGCCACCGT GATCATCGCC
GAGGCCAATT CCGAGGCCGA GCAGATCCGC GGTTCGGGCG ACGCCGAGCG CAACCGGCTG
TTCGCGACCG CCTATTCGAA GGACCCCGAG TTCTTCGCGT TCTATCGGTC GATGACCGCC
TATGAGCAGT CGCTGAAGAG CAACGACACC CGGTTCCTGC TGCGGCCGGA TTCGGACTTC
TTCCGGTTCT TCGGCAGTGC CGAAGGGCGG GCCCCGGCAG GCGCTGCCGC GGCGGCAGCT
CCTGCGGCCC CAACCGCACC GCGCTGA
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| Protein sequence | MKAGVAGAVA LIVALVAIIV GWSSLFTVSQ TEQVLLVRLG EPVRVVTEPG LHFKAPFIDT
VISIDKRILD LENPSQEVIA ADQKRLVVDA FARYRIKNAL RFYQSVGSIP AANVQLTTLL
NASLRRVLGE VTFIQVVRDE REGLMARIRT QLDKEAEGYG ISVVDVRIRR ADLPEQNSQA
VYQRMQTERQ REAAEFRAQG GQKAQEIRSK ADREATVIIA EANSEAEQIR GSGDAERNRL
FATAYSKDPE FFAFYRSMTA YEQSLKSNDT RFLLRPDSDF FRFFGSAEGR APAGAAAAAA
PAAPTAPR
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