| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3940 |
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| Symbol | |
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| ID | 6411621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4226990 |
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| End bp | 4228486 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713821 |
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| Product | methylmalonate-semialdehyde dehydrogenase |
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| Protein accession | YP_001992911 |
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| Protein GI | 192292306 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.90589 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCACGG TCGGGCATTT CATCGGCGGC AAAGAGGTCG AGGGCAAGTC GGGGCGTTTC
GCCGACGTGT TCGAGCCGAT GACCGGCGAG GTGAAGGCCA AAGTCGCCCT CGCCACCAAA
GCCGAGCTCC GCGCAGCGGT TGAAAACGCC AAGGCCGCGC AGCCGGAATG GGGCGCCACC
AACCCGCAGC GCCGCGCCCG CGTGCTGATG AAGTTCCTCG AATTGGTGCA GCGCGATTAC
GACAAGCTCG CCGAGCTGCT CGCGCGCGAA CATGGCAAGA CCATCCCCGA CGCCAAGGGT
GACATTCAGC GCGGCCTCGA AGTCGCCGAG TTCGCCTGCG GCATTCCGCA TCTGATGAAG
GGCGAATACA CCGAGGGCGC CGGCCCCGGC ATCGACATCT ATTCGATGCG CCAGCCGCTC
GGCGTCGTCG CCGGCATCAC CCCGTTCAAC TTCCCGGCGA TGATCCCGAT GTGGAAGTTC
GCCCCGGCGA TCGCCTGCGG CAACGCCTTC ATCCTGAAGC CGTCGGAGCG TGACCCCGGC
GTGCCGATGG CGCTGGCGGC GCTGATGCTC GAAGCCGGTC TGCCGCCGGG CATCCTCAAC
GTCGTCAACG GCGACAAGGA AGCGGTCGAC GCCATCCTCG ACGATCCGGA CATCAAGGCG
GTCGGCTTCG TCGGCTCCTC GCCGATCGCG CAGTACATCT ATGAGCGTGC GGCGCAGACC
GGCAAGCGCG CGCAATGCTT CGGCGGTGCC AAGAACCACG CCATCATCAT GCCGGATGCC
GATATCGACC AGACCGTCGA CGCGCTGATC GGTGCCGGCT ACGGCTCGGC CGGTGAGCGC
TGCATGGCGA TCTCGGTCGC GGTGCCGGTC GGCAAGGCCA CCGCGGAAGC GCTGATGAGC
AAGCTGATCC CGCGCGTCGA AGCGCTGAAG ATCGGTCCGT CCACCGATCC GACCGCCGAT
TACGGTCCGC TGGTCACCAA GGAAGCGCTG GAGCGCGTCA AGAACTACGT CGATATCGGC
GTCAAGGAAG GCGCGACGCT CGCGGTCGAC GGCCGCGGCT TCAAGATGCA GGGCTACGAG
AACGGCTTCT ACATGGGCGG CTGTCTGTTC GACAACGTCA CCAAGGACAT GCGGATCTAC
AAGGAAGAGA TCTTCGGCCC CGTCCTGAGC GTCGTCCGCG CCCACGACTA TGCCGAAGCG
CTGGCGCTGC CGTCCGACCA CGACTACGGC AACGGCGTCG CGATCTTCAC CCGCGACGGT
GACGCCGCCC GCGACTTCGC CGCCAAGGTC AATGTCGGCA TGGTCGGGAT CAACGTGCCG
ATCCCGGTGC CGATCGCCTA CTACACCTTC GGCGGCTGGA AGAAGTCCGG CTTCGGCGAC
CTCAACCAGC ACGGCCCGGA CTCGATCCGA TTCTACACCA AGACCAAGAC CGTCACCTCG
CGCTGGCCGT CGGGCGTGAA GGAAGGCGCG GAGTTTTCGA TCCCGCTGAT GAAGTAA
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| Protein sequence | MRTVGHFIGG KEVEGKSGRF ADVFEPMTGE VKAKVALATK AELRAAVENA KAAQPEWGAT
NPQRRARVLM KFLELVQRDY DKLAELLARE HGKTIPDAKG DIQRGLEVAE FACGIPHLMK
GEYTEGAGPG IDIYSMRQPL GVVAGITPFN FPAMIPMWKF APAIACGNAF ILKPSERDPG
VPMALAALML EAGLPPGILN VVNGDKEAVD AILDDPDIKA VGFVGSSPIA QYIYERAAQT
GKRAQCFGGA KNHAIIMPDA DIDQTVDALI GAGYGSAGER CMAISVAVPV GKATAEALMS
KLIPRVEALK IGPSTDPTAD YGPLVTKEAL ERVKNYVDIG VKEGATLAVD GRGFKMQGYE
NGFYMGGCLF DNVTKDMRIY KEEIFGPVLS VVRAHDYAEA LALPSDHDYG NGVAIFTRDG
DAARDFAAKV NVGMVGINVP IPVPIAYYTF GGWKKSGFGD LNQHGPDSIR FYTKTKTVTS
RWPSGVKEGA EFSIPLMK
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