Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3924 |
Symbol | |
ID | 6411604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4208560 |
End bp | 4209018 |
Gene Length | 459 bp |
Protein Length | 152 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642713805 |
Product | DNA mismatch endonuclease Vsr |
Protein accession | YP_001992896 |
Protein GI | 192292291 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3727] DNA G:T-mismatch repair endonuclease |
TIGRFAM ID | [TIGR00632] DNA mismatch endonuclease Vsr |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGACTGATG TTCTATCGCG CGAACAACGG CGGTTTAATA TGAGCCGCAT ACGCGGCTCG AATACCAAGC CGGAGGTGCT GGTCCGCTCT GCTCTCCATG CGCTGGGGTT TCGGTTCAGG CTGCATGATC GGAGGCTTCC GGGGACGCCA GATATTGTGT TGCGGCGGCA CCGTGCCGTT ATTTTTGTAA ATGGCTGCTT TTGGCACGGT CATGGCTGCA AGTACTCAAA GATGCCAAAT ACCCGTGCTG AATTTTGGCG GCAGAAGATT AGCCGGACCA AAGCGCGGGA CACGGCGGCA ATCGAGCAGC TGCTTAATCT CGGCTGGAAT GTAATTGTGG TTTGGGAGTG CTCTCTCCGT GGCCGCGATC AAGTTGCCCG GAATTCAGCC TGGACGTCGA TAAGGACAGC GCTCGCGAAA CGCCACCCAA CAATTTCAGA GGTTGTTCCG TTACACTAA
|
Protein sequence | MTDVLSREQR RFNMSRIRGS NTKPEVLVRS ALHALGFRFR LHDRRLPGTP DIVLRRHRAV IFVNGCFWHG HGCKYSKMPN TRAEFWRQKI SRTKARDTAA IEQLLNLGWN VIVVWECSLR GRDQVARNSA WTSIRTALAK RHPTISEVVP LH
|
| |