| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3857 |
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| Symbol | |
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| ID | 6411537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4143765 |
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| End bp | 4146686 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642713739 |
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| Product | hypothetical protein |
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| Protein accession | YP_001992830 |
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| Protein GI | 192292225 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.663936 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCCG CCGAATTCAT CAAGAAATGG AAGCCTGTCG CGCTGACGGA GCGCGCGGCC
GCACAGACTC ACTTCCTCGA TCTGTGCAAG CTGTTCGAGC ACGAAGATCC GGTGTCGGCC
GACCCGACGG GTGAATGGTT CACCTTCGAG AAAGGCGCAA CCAAAACCGG CGGCGGCGAC
GGCTTTGCGG ACGTCTGGAA GAAGAACTAC TTTGCCTGGG AATATAAGAA GAAGAAGCGC
GACCTCGGCG TCGCAATGAA CCAGCTCGTT CGCTACGCTG CAGCACTGGA AAATCCGCCG
CTGCAGGTCG TTTGCGACAC CGATCGCTTC GTCATCCGCA CCGCCTGGAC CAATACGGTT
CCGAAGGAAT ACGAGATCGA GCTTGACGAT CTTGCCGATC CGGAGAAGCG CAAGATTCTC
TGGGCGGTGT TTCACGACCC CGAGCAGTTG CGGCCGCAGC AGACCCGCAC CGCGATCACT
AAGGAAGCCG CCGACAAATT CTCAACCATC GCGCTACGCC TGCAGGGCCG CGGCACGCCG
GAAGAGATCG CGCACTTTGT CAATCAGTTG GTGTTCTGTT TCTTTGCGAG CAGTGTCAAG
CTGCTGCCGG AAGGCTTCTT TCCGAAGCTA CTGAAGCGCG CAGCGCAAAA GCCACAACAT
GCCATCGACT ACTTCAACAA GCTGTTTGAG GCGATGGAGA ACGGGGGTGA ATACGACCTG
ACTGACATCG CGCATTTCAA CGGCGGGCTA TTCGACGGGC GCCGCGCGCT CAAACTCGAC
GAGGGCGATA TCGGCCTCTT GATCGAGGCC GGCAGTCTCG ATTGGGGCCA GATCGATCCG
ACGATCTTCG GCACGCTGTT CGAGCGTTTC CTCGATCCCG ACAAGCGGGC TCAGATCGGC
GCGCACTACA CCGACCCCGA CAAGATCCTG ATGATCGTTG AGCCGGTGAT TCTGCGGCCG
CTTCGAGCGG AATGGGACGC CGCACGCGCG AAAATTGCTG AGATCGCTGG AGAAGCCAAC
GCGTTGCAAC AAACCGGCTT CAGCAAGCAA GGCGCCAAGA GCTTCGACAA GAAGATCACG
AATATTCGTG CGAAAGCCGA AGTCATCCGG GATCAATTCA TCGAGCGGCT GCGCGGCATC
ACCATCCTCG ATCCAGCTTG CGGCTCGGGC AACTTCCTGT ATCTCGCCTT GCAAGGGGTT
AAGGATATCG AGCTCCGCGC CAACCTCGAA TGCGAAGCGC TCGGACTGTC GCCGCGACTT
CCGGTAATTG GCCCGGAAAT CGTCCACGGC CTCGAGATCA ATGAACTCGC CGCGGAGCTG
GCGCGCACCA CGATCTGGAT CGGCGACATC CAATGGCGCA TCCGCAACGG CATCTACTCC
AACCCGCGTC CGATCCTGCG CAAGCTGGAT TCGATCGAAT GCCGTGACGC GCTGATTACT
AAGCTAACAG ATGGAACTTA CGCAGAGGCC GAATGGCCTA CGGCTGAATT TATCGTGGGC
AATCCGCCAT TCTTGGGCGA CAAATTTATG CTTGATCGCT TGGGAGTGAG ATACACCCAA
GCACTTCGCG AAGCTTTTCT CGGCAGAGTC CCGGGAGGCT CAGATCTTGT TTGTTACTGG
CTAGAGAAGG CTCGAGCACA GATACTTTCA AATGAGACGT TTGGCGCAGG ATTTGTCGCG
ACCAATTCAA TACGCGGCGG AGCAAATCGC ACCGTTGTCG ACAGAGTCAC GGCTGATCTA
GACATTTTCT GCGCTTGGGC CGACGAAGAC TGGACAATCG AAGGCGCCGA CGTCCGTGTC
TCACTCATTT GCTTTTCCTC GAAAGGCCGG GCCCAATTGC TTGTCGAACT CAACGGTCAG
AGCGTCGCCC GCATATTCTC GGACCTGACA AGCAGCGCAA CCGATTTTAC ACGCGCTCGT
AGCCTGAGAT CGTGCCGTGA GGTTGCGTTT ATCGGCAATC AAAAGGGCGG CGCATTCGAT
CTACCGGGAT CAATCGCCCG TTCATTCCTC ACTCTGCCTC AGAACCCTAA CGGAAACTCG
AATGCGGATG TCGTCAAGCC ATGGATCAAT GGACTCGACA TCGTTCGACG CCCCAGGGAC
TATTGGATCA TTGACTTCAC TGGCTTACAA GAATCCGAGG CTGCTCTTTA CGAGGGGCCA
TTTCAGTACA TTCTGGAGCA CGTTAAGGAG TATCGGAACG AAGAAGCTCA CGAATCGAGC
AAGATGAATT GGTGGATACA TCAGAGGCCA CGCCATGCGC TTCGATTAGC CATAGACGGA
CAGTCACGCT ACTTGGCCAC CGCACGTGTC GCCAAGCACC GGCTATTCAT TTGGGTTGAT
CATCAAGTCG TACCTGACAG TCAGGTTGTA GCTATTGCAC GAAGCGACGA TGCGACCTTT
GGCATTCTAC ACTCTAGCTT CCACGAGTCA TGGACGCTTC GCCTCTGCAC ATGGCTCGGC
GTTGGCAACG ACCCACGCTA TACACCGACC ACTACCTTCG AAACCTTCCC TTTCCCCGAA
GGCTTGACGC CGGACATCCC GGCGGGGGAC TACGCCGACG ACCCGCGCGC GCAGGCGATC
GCGAAGGCGG CGAAGCGGCT CGACGAACTG CGCAAAGCGT GGCTCAATCC GCCCGATCTG
GTCCGGATCG AGCCGGAGGT CGTGCCGGGT TATCCCGACC GCATCCTGCC GAAGGACACA
AAGGCGGCGT CCGAATTGAA GAAGCGGACG TTGACCAATC TTTACAACGC GCGTCCGCAA
TGGCTGGCCG ACGCGCATCG CGATCTCGAT GCCGCGGTCG CTGCGGCCTA TGGCTGGCCC
GCCGACATTA CGGAAGACGA CGCACTGGCG AAGCTGCTGG AGCTGAATCT GTCGCGCGCG
GGCGCGTCGA GCCCGCCTCC GGCCAACAAG GATGAAGGTT AG
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| Protein sequence | MTPAEFIKKW KPVALTERAA AQTHFLDLCK LFEHEDPVSA DPTGEWFTFE KGATKTGGGD
GFADVWKKNY FAWEYKKKKR DLGVAMNQLV RYAAALENPP LQVVCDTDRF VIRTAWTNTV
PKEYEIELDD LADPEKRKIL WAVFHDPEQL RPQQTRTAIT KEAADKFSTI ALRLQGRGTP
EEIAHFVNQL VFCFFASSVK LLPEGFFPKL LKRAAQKPQH AIDYFNKLFE AMENGGEYDL
TDIAHFNGGL FDGRRALKLD EGDIGLLIEA GSLDWGQIDP TIFGTLFERF LDPDKRAQIG
AHYTDPDKIL MIVEPVILRP LRAEWDAARA KIAEIAGEAN ALQQTGFSKQ GAKSFDKKIT
NIRAKAEVIR DQFIERLRGI TILDPACGSG NFLYLALQGV KDIELRANLE CEALGLSPRL
PVIGPEIVHG LEINELAAEL ARTTIWIGDI QWRIRNGIYS NPRPILRKLD SIECRDALIT
KLTDGTYAEA EWPTAEFIVG NPPFLGDKFM LDRLGVRYTQ ALREAFLGRV PGGSDLVCYW
LEKARAQILS NETFGAGFVA TNSIRGGANR TVVDRVTADL DIFCAWADED WTIEGADVRV
SLICFSSKGR AQLLVELNGQ SVARIFSDLT SSATDFTRAR SLRSCREVAF IGNQKGGAFD
LPGSIARSFL TLPQNPNGNS NADVVKPWIN GLDIVRRPRD YWIIDFTGLQ ESEAALYEGP
FQYILEHVKE YRNEEAHESS KMNWWIHQRP RHALRLAIDG QSRYLATARV AKHRLFIWVD
HQVVPDSQVV AIARSDDATF GILHSSFHES WTLRLCTWLG VGNDPRYTPT TTFETFPFPE
GLTPDIPAGD YADDPRAQAI AKAAKRLDEL RKAWLNPPDL VRIEPEVVPG YPDRILPKDT
KAASELKKRT LTNLYNARPQ WLADAHRDLD AAVAAAYGWP ADITEDDALA KLLELNLSRA
GASSPPPANK DEG
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