| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3853 |
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| Symbol | |
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| ID | 6411533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4140809 |
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| End bp | 4141531 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713735 |
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| Product | porin |
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| Protein accession | YP_001992826 |
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| Protein GI | 192292221 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3637] Opacity protein and related surface antigens |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACGA TGAAGAACAC TCTGCTCGGC GCAGCGGCTG TGATCGCGCT CTCCGCTCCC
GCCTTTGCCG CCGACCTGCC GCCGCGGCCC TATACCAAGG CCGCGCCCGC CTATACGGCG
CCCGAGGTGG TTTACAACTG GACCGGCTTC TATGTCGGCG GCCACGTCGG TGGCGCCTGG
GCCGGCGATA ACAATATCAC TGGCAACTCC GGCCGCTTCT TCGGCGGTGT CCAGGGCGGC
GCGGACTATC AGTTCGCCAC CAACTGGGTG ATCGGTATCG AAGCCCAGTA TAGTTGGATG
TCGTCGAACA ACACCGGCGT GATCTTCCCC GGCGGCAGCA CCGCGACCGA AGATACCCGG
GGCCTCGGGT CGGTCACTGG CCGACTCGGC TACGCCTGGG GCCCCACGCT GGTTTACGCC
AAGGGCGGTT ACGCCTGGCG CGACAGCGAT CTCAGCGTCG CGTCGCTCGG CGGCGTGCCG
TCCGGCTACA CTGCCAGCGG CAGCCGCAAC GATGGTTACA CCGTCGGCGC CGGTCTCGAA
TACATGTTCG CGCCGAGCTG GTCGGCCAAG GTCGAGTACC AGTACTACAA GTTCGGCGAC
ACCACCTTCA CCGGCGGTCC GGCGGACGTG GTCGGCACCT CGTTCCGCAA CGACGAACAC
ACCGTCAAGG CCGGTATCAA TTACCGCTTC GGCTGGGGTG GTCCGGCGGT TGCCAAATAC
TGA
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| Protein sequence | MKTMKNTLLG AAAVIALSAP AFAADLPPRP YTKAAPAYTA PEVVYNWTGF YVGGHVGGAW
AGDNNITGNS GRFFGGVQGG ADYQFATNWV IGIEAQYSWM SSNNTGVIFP GGSTATEDTR
GLGSVTGRLG YAWGPTLVYA KGGYAWRDSD LSVASLGGVP SGYTASGSRN DGYTVGAGLE
YMFAPSWSAK VEYQYYKFGD TTFTGGPADV VGTSFRNDEH TVKAGINYRF GWGGPAVAKY
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