| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3840 |
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| Symbol | |
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| ID | 6411518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4127039 |
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| End bp | 4129318 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642713721 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001992814 |
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| Protein GI | 192292209 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.385478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTCTC GTCTCACGCG GCAGATCCTG GCGAAGGTCG GCCTCGATTG CGCGTTCGCC
GGCGCGGTGG TCGCAATCAC GGTCGCCGGC GGCTTCGGTC TGCAGGCGCT ACTGGCGATC
GCGCCGTCGG CGTCGCTGTT TTCCTGTGGG GTGATGTTCG TCGCCTGGCG GCGGGGCATC
GCCGCGGCCA TTGCGGCGAT CGTGATGGCG ATCCTGGCGT TCGACTACTT CTTCCTTGCG
CCGCTGCACA GCTTCGCCAT CAGGGCGCAC GACGTTCCGC AGCTGGTGTT CTTCGCCGCC
GCGGCGCTGT TCGTCGCCTA TCTGTGCGAT CTCAATCGCC GGATAAACCA CGCCCGGCAT
GCGCTCGAAT TCGAATTACG CGCGAGCCAG CGCCGCGTCG CCGAAGCGCA GCGCGAACTG
CAACAGACCG TCGACTCGAT CCCCGCGATG CTGTCAATGT ATCGGCCGGA CGGCATCCAC
AGCCTCGTCA ACAGAACCTG GATGGACTAC ACGGGACTGT CTCTCGAAGA GGCGGTCTGG
AAGGGCGGAA CGCTGTTCCA TCCAGGCGAT CCGGAGCGCG AGGCGTGGCG CCAGGCGCTG
GCGAGCGGCA CCCCGATGGC CACCGAGGCG CCGATCCGCG GCGCCGATGG AACGTTTCAG
TGGTTCAGCA TCCGCCGGGC GCCGCTGCGC GACGCCGGCG GCCGCATCCA GAAATGGTTC
TCGATCGGCT TCAATATCGA GGATCGTAAG ATCGCCGAGG ATGCGTTGCG CGACCGGGAA
GCACGGCTGG CGGCGACCGA GCGCGAGTTG CGCCTCACGC TCGATCTGAT TCCGACGCTG
GCGTGGCGGA CCGCTGCGGA CGGCTCGGCC GACTATCTCA ATCAGCGCTG GCTGGACTAC
ACCGGGCTGT CGCTGGAAGC CGCGCGGGGG TGGGGCTGGA TCTCCGTCGT CCATCCGGAC
GATCGCGCGC AGCTGCACGA CCGCTGGCAG CAGATGCTGG CCTCGCACCA GCCCGGCGAG
GTCGAGGCGC GGATGCGCCG CCGCGACGGC AGCTATCGCT GGTTTCTGTT TCGCGCCGAA
GCGCATCGCG GCGACGGCGG CGAGGTCGTG GGCTGGTACG GCACCAATAC CGACATCGAG
GACCGCAAGT GCGCCGAATT CGATCTGCAG CGGAGCCGGC TGTATCTCGC CGAGGCGCAG
AAGCTGAGCA AGACCGGAAG CTTCGCCTGG GACCCGGTCG CTGACCGGCA TCTGTGGTCC
GACCAGACCT ATCAGATCAC CGACATCGAA CCGAGGACGG CGGTGACGAC GGATCTGCTG
CTGCAGCGGA TACATCCCGA TGACCGCCGC AAAATGATCA ACGAACTCGG CCGCGCGAAA
GACGGCGCCG AGGCGTGGGA CTACGAAGTG CGGCTGCTGA TGCCGGACCG GTCGAGCAAG
CAGCTGCGCG TCGTCGCCCA CCGACTCCAC CGCGGCGACG AGGCCGGCGA GATCGTCGGC
GCGCTGATGG ACATCACCGA GACGCGGCGG GCGCAGGAGG CGCTCAACGC CGCGCGCAAC
GCCCTCGCAC ACGCCGGGCG CATCGCCACG CTGGGCGAGA TCAGCGCGAC GATCGCCCAC
GAGGTCAATC AGCCGCTCGC GGCGATCGTC GCCAACGGCC AGGCCTGTCT GCGGTTTCTC
GATCGCCCGG CGCCGGACCT GGACGATGTG CGGGGCGCGG TCGAGTGGAT CGTCAAGGAC
GGCAACCGGG CGGCGGACGT CATCCGCCGT GTCCGAGGCC TGATGACCAA GGCCGAGTTC
GAGCGCCGGC AGCTCGGGCT TGCGAGCATC GTCGCCGAGG TGGTGGCCTT GATCCAGAAT
GAAATCCACT CCCAAGGCAT CGCGCTGCGC TGCGACTTCG GCGCCGCGCC GCCGGTGATG
GCCGACCACG TGCAGTTGCA GCAGGTGGTG CTCAACCTGA TCGTCAACGC CATCGAGGCG
ATGCACCAGG TGGCAGATCG GCCGCGGACG CTGACGATCA GCACGTCGTG CGACGCGGCC
GGCCGGGCGG TCGTGGCGGT GGAGGACAGT GGCATCGGCG TTCCCGACGA TCCGCAGGCG
CTGTTCGATC CGTTCGTCAG CACCAAGCCG AATGGTCTGG GCATGGGCCT GCCGATCTGC
CGCTCGATCA TCGAGGAGCA CGGCGGGCAG CTCTGGGCGA CCGCCAATCC GGATCATCCC
GGCGCGACAT TCCAATTCGC GCTCGCCCCC GCGGCCGAGT TGGCGCGAGC CGCCGAATGA
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| Protein sequence | MPSRLTRQIL AKVGLDCAFA GAVVAITVAG GFGLQALLAI APSASLFSCG VMFVAWRRGI
AAAIAAIVMA ILAFDYFFLA PLHSFAIRAH DVPQLVFFAA AALFVAYLCD LNRRINHARH
ALEFELRASQ RRVAEAQREL QQTVDSIPAM LSMYRPDGIH SLVNRTWMDY TGLSLEEAVW
KGGTLFHPGD PEREAWRQAL ASGTPMATEA PIRGADGTFQ WFSIRRAPLR DAGGRIQKWF
SIGFNIEDRK IAEDALRDRE ARLAATEREL RLTLDLIPTL AWRTAADGSA DYLNQRWLDY
TGLSLEAARG WGWISVVHPD DRAQLHDRWQ QMLASHQPGE VEARMRRRDG SYRWFLFRAE
AHRGDGGEVV GWYGTNTDIE DRKCAEFDLQ RSRLYLAEAQ KLSKTGSFAW DPVADRHLWS
DQTYQITDIE PRTAVTTDLL LQRIHPDDRR KMINELGRAK DGAEAWDYEV RLLMPDRSSK
QLRVVAHRLH RGDEAGEIVG ALMDITETRR AQEALNAARN ALAHAGRIAT LGEISATIAH
EVNQPLAAIV ANGQACLRFL DRPAPDLDDV RGAVEWIVKD GNRAADVIRR VRGLMTKAEF
ERRQLGLASI VAEVVALIQN EIHSQGIALR CDFGAAPPVM ADHVQLQQVV LNLIVNAIEA
MHQVADRPRT LTISTSCDAA GRAVVAVEDS GIGVPDDPQA LFDPFVSTKP NGLGMGLPIC
RSIIEEHGGQ LWATANPDHP GATFQFALAP AAELARAAE
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