| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3705 |
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| Symbol | |
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| ID | 6411382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3964809 |
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| End bp | 3965576 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642713586 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992680 |
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| Protein GI | 192292075 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.551214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTGT TCGACCTGAG CGGTAAAGTC GCCGTCATCA CTGGTTCGTC GCGCGGCATC
GGCAAGGCGA TCGCCGAGCG GATGGCCGAG CACGGCGCCA AAGTGGTGAT CTCGTCGCGC
AAGCAGGACG CCTGCGATGC GGTCGCCAAG TCGATCAACG ACACCTATGG AGCTGGGACC
GCGCTGGCGC TCGCCGCCAA CATCTCGAGC AAGGACGATC TGAAGCGCCT GGCGCAGGAA
GCGACGCAGA CCTTCGGCAA GATCGACGCG CTGGTCTGCA ACGCCGCGTC GAACCCGTAT
TATGGCCCGC AGGCCGGCAT CAACGACGAT CAGTTTCGCA AGATCCTCGA CAACAACATC
GTGGCCAATC ACTGGCTGAT CAGCGAAGTG GTGCCGCAGA TGATCGCGCG TAAGGACGGC
TCGATCACCA TCGTGTCCTC GATCGGCGGG TTGAAGGGCT CGACCGTGAT CGGCGCCTAC
TGCATCTCCA AGGCCGCCGA CATGCAGCTC GCCCGCAACC TCGCCTGCGA ATACGGCGAG
CACAACATTC GCGTCAATTG CATCGCGCCG GGCTTGATCA AGACCGACTT CGCCCGGGCG
CTGTGGGAGA ACCCGGAGAC GCTGAAGGCC TCGACCGCGC GTTCGCCGCT GCAGCGGATC
GGCGAGCCCG ACGAGATCGC CGGCGCCGCG GTCTTCCTCG CCTCCAAGGC CGGCACCTTC
ACCACCGGCC AGACCATCGT GATCGACGGT GGCGCGACGA TTAGTTGA
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| Protein sequence | MNLFDLSGKV AVITGSSRGI GKAIAERMAE HGAKVVISSR KQDACDAVAK SINDTYGAGT
ALALAANISS KDDLKRLAQE ATQTFGKIDA LVCNAASNPY YGPQAGINDD QFRKILDNNI
VANHWLISEV VPQMIARKDG SITIVSSIGG LKGSTVIGAY CISKAADMQL ARNLACEYGE
HNIRVNCIAP GLIKTDFARA LWENPETLKA STARSPLQRI GEPDEIAGAA VFLASKAGTF
TTGQTIVIDG GATIS
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